miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 155124 1.13 0.000986
Target:  5'- aGCAGGAUGCGCCUAUAGCGCCCGGCCu -3'
miRNA:   3'- -CGUCCUACGCGGAUAUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 105648 0.77 0.244598
Target:  5'- aGCAGGAgacccuCGCUgUGUGGCGCCCGGUg -3'
miRNA:   3'- -CGUCCUac----GCGG-AUAUCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 97890 0.76 0.307917
Target:  5'- aCAGGggGCGCCUuccccUGGC-CUCGGCCg -3'
miRNA:   3'- cGUCCuaCGCGGAu----AUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 60095 0.74 0.399429
Target:  5'- gGUAGGcgacgcUGCGCCUGagGGCGCCCgucaGGCUg -3'
miRNA:   3'- -CGUCCu-----ACGCGGAUa-UCGCGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 165806 0.74 0.407802
Target:  5'- -uGGGGUGauCCUGUAGCGCCgCGGUUu -3'
miRNA:   3'- cgUCCUACgcGGAUAUCGCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 160013 0.74 0.367061
Target:  5'- cCGGGAccGCGCCcuccucugGGcCGCCCGGCCu -3'
miRNA:   3'- cGUCCUa-CGCGGaua-----UC-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 55741 0.73 0.460251
Target:  5'- gGCGGGAgagauggggGCGCCU--GGgGCCgaGGCCa -3'
miRNA:   3'- -CGUCCUa--------CGCGGAuaUCgCGGg-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 34599 0.73 0.442362
Target:  5'- gGguGGAggcUGCGCCUG-AGCuGCCUGGUg -3'
miRNA:   3'- -CguCCU---ACGCGGAUaUCG-CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 133440 0.72 0.478516
Target:  5'- cCGGGuugGUgGCaCUGUuGCGCCCGGCCc -3'
miRNA:   3'- cGUCCua-CG-CG-GAUAuCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 28465 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 131280 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 51667 0.72 0.50656
Target:  5'- cCAGGAUG-GCCacgguggGGgGCCUGGCCu -3'
miRNA:   3'- cGUCCUACgCGGaua----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 87892 0.72 0.478516
Target:  5'- cGCGGGGccucacauagUGaCGCCUccuucCGCCCGGCCu -3'
miRNA:   3'- -CGUCCU----------AC-GCGGAuauc-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 67047 0.72 0.497131
Target:  5'- uGCGGGuccgGgGCCUAaugccUGGCaucuGCCUGGCCa -3'
miRNA:   3'- -CGUCCua--CgCGGAU-----AUCG----CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 117923 0.71 0.564553
Target:  5'- aGCuGGggGCGCg---GGUGCCUGGCUg -3'
miRNA:   3'- -CGuCCuaCGCGgauaUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 72472 0.71 0.544984
Target:  5'- cGCGGGAgccgGCgGCCUcggaGGUGCCCGGgUg -3'
miRNA:   3'- -CGUCCUa---CG-CGGAua--UCGCGGGCCgG- -5'
33610 3' -58.6 NC_007605.1 + 50381 0.71 0.564553
Target:  5'- -gAGGAcggGCGCCggccgccAGCGCCCccguGGCCu -3'
miRNA:   3'- cgUCCUa--CGCGGaua----UCGCGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 38921 0.71 0.554743
Target:  5'- aGCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- -CGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 112028 0.71 0.544984
Target:  5'- gGCAGGAacGCGagca-AGCGCCgGGCCa -3'
miRNA:   3'- -CGUCCUa-CGCggauaUCGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 67971 0.7 0.614156
Target:  5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3'
miRNA:   3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.