miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 126671 0.7 0.584302
Target:  5'- uGCuGGAUGUGCC-AUgccccaggcuaAGgGCCUGGCUg -3'
miRNA:   3'- -CGuCCUACGCGGaUA-----------UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 101830 0.7 0.574408
Target:  5'- --uGGAcgagaGCGCCUcUGGCGCCCucggcuccucGGCCa -3'
miRNA:   3'- cguCCUa----CGCGGAuAUCGCGGG----------CCGG- -5'
33610 3' -58.6 NC_007605.1 + 52948 0.7 0.594229
Target:  5'- uGCGGGGgaccaauaGCUUGggGGCGUCCGGCUg -3'
miRNA:   3'- -CGUCCUacg-----CGGAUa-UCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 121594 0.7 0.604183
Target:  5'- aGCAGcGucccauUGCGCUg--AGCGCCCaccuuGGCCu -3'
miRNA:   3'- -CGUC-Cu-----ACGCGGauaUCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 67971 0.7 0.614156
Target:  5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3'
miRNA:   3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 37364 0.7 0.624142
Target:  5'- gGC-GGAaaaGCGUCUGgacuggauaGGCGCCCGGCa -3'
miRNA:   3'- -CGuCCUa--CGCGGAUa--------UCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 107479 0.69 0.634134
Target:  5'- -aAGGcgGUGgagcaGGCGCCCGGCCa -3'
miRNA:   3'- cgUCCuaCGCggauaUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 158907 0.69 0.644124
Target:  5'- uUAGGAcG-GCCUcgcgcAGCGCCCGGCa -3'
miRNA:   3'- cGUCCUaCgCGGAua---UCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 60257 0.69 0.642127
Target:  5'- cCAGGAgGCGCCUucugaggGUGGCcgugucgGCCgUGGCCa -3'
miRNA:   3'- cGUCCUaCGCGGA-------UAUCG-------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 78326 0.69 0.683918
Target:  5'- cCGGuGAUGCGCCUGacguuGUGCC-GGCUg -3'
miRNA:   3'- cGUC-CUACGCGGAUau---CGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 123594 0.69 0.66407
Target:  5'- aGUAGGucucGCGCCUGUcucgcGGgGCCgGGgCCg -3'
miRNA:   3'- -CGUCCua--CGCGGAUA-----UCgCGGgCC-GG- -5'
33610 3' -58.6 NC_007605.1 + 154153 0.69 0.66407
Target:  5'- aGCAGcuucuuGAUG-GCCUu--GCGCuuGGCCa -3'
miRNA:   3'- -CGUC------CUACgCGGAuauCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 141706 0.69 0.66407
Target:  5'- gGCGGGggGUGCCggcuGCaGCCgGGUCc -3'
miRNA:   3'- -CGUCCuaCGCGGauauCG-CGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 13473 0.69 0.634134
Target:  5'- aCGGGGUGCGCCgcUA-CGCCa-GCCa -3'
miRNA:   3'- cGUCCUACGCGGauAUcGCGGgcCGG- -5'
33610 3' -58.6 NC_007605.1 + 110345 0.69 0.654105
Target:  5'- uGCuauGGGUccgcuacaGcCGCCUGUGGCaggcCCCGGCCc -3'
miRNA:   3'- -CGu--CCUA--------C-GCGGAUAUCGc---GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12771 0.68 0.72209
Target:  5'- -gGGGGcgguccuugauccUGCGCCg--GGCGgacgcggucagcCCCGGCCa -3'
miRNA:   3'- cgUCCU-------------ACGCGGauaUCGC------------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 168912 0.68 0.713362
Target:  5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3'
miRNA:   3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12188 0.68 0.703602
Target:  5'- cGCaAGGAgcaguaccUGCGCCagGUGGCcaccgaggGUCUGGCCa -3'
miRNA:   3'- -CG-UCCU--------ACGCGGa-UAUCG--------CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 111317 0.68 0.6928
Target:  5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3'
miRNA:   3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 48678 0.68 0.732676
Target:  5'- aGCAGGc----CCUGauGCGCCUGGCCg -3'
miRNA:   3'- -CGUCCuacgcGGAUauCGCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.