Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 149563 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 152632 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 158769 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 12771 | 0.68 | 0.72209 |
Target: 5'- -gGGGGcgguccuugauccUGCGCCg--GGCGgacgcggucagcCCCGGCCa -3' miRNA: 3'- cgUCCU-------------ACGCGGauaUCGC------------GGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 168912 | 0.68 | 0.713362 |
Target: 5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3' miRNA: 3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 12188 | 0.68 | 0.703602 |
Target: 5'- cGCaAGGAgcaguaccUGCGCCagGUGGCcaccgaggGUCUGGCCa -3' miRNA: 3'- -CG-UCCU--------ACGCGGa-UAUCG--------CGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 111317 | 0.68 | 0.6928 |
Target: 5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3' miRNA: 3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 155700 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 116561 | 0.68 | 0.742213 |
Target: 5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3' miRNA: 3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 61474 | 0.67 | 0.76932 |
Target: 5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3' miRNA: 3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 140463 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 137394 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 42797 | 0.67 | 0.751658 |
Target: 5'- cGCAGGGUGCugugGCUgg-GGaGCCCcGCCa -3' miRNA: 3'- -CGUCCUACG----CGGauaUCgCGGGcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 113801 | 0.67 | 0.770238 |
Target: 5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3' miRNA: 3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 118252 | 0.67 | 0.751658 |
Target: 5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3' miRNA: 3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 58934 | 0.67 | 0.770238 |
Target: 5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3' miRNA: 3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 102243 | 0.67 | 0.78835 |
Target: 5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3' miRNA: 3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 2698 | 0.67 | 0.797208 |
Target: 5'- cCAGGGcgGCgGCCc--GGCGCCaacaGGCCu -3' miRNA: 3'- cGUCCUa-CG-CGGauaUCGCGGg---CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 91741 | 0.67 | 0.770238 |
Target: 5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3' miRNA: 3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 52035 | 0.67 | 0.755408 |
Target: 5'- -uGGGA-GUGCCaUAaGGCauaagauuucucaggGCCCGGCCg -3' miRNA: 3'- cgUCCUaCGCGG-AUaUCG---------------CGGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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