miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 155807 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 152738 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 149670 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 146601 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 140463 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 137394 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 42797 0.67 0.751658
Target:  5'- cGCAGGGUGCugugGCUgg-GGaGCCCcGCCa -3'
miRNA:   3'- -CGUCCUACG----CGGauaUCgCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 118252 0.67 0.751658
Target:  5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3'
miRNA:   3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38310 0.67 0.797208
Target:  5'- gGCGGGGcugGCGCag--AGCGCCCucCCg -3'
miRNA:   3'- -CGUCCUa--CGCGgauaUCGCGGGccGG- -5'
33610 3' -58.6 NC_007605.1 + 55452 0.67 0.797208
Target:  5'- uCAGGAggggGCGCUga-GGCcucacauCCCGGCCc -3'
miRNA:   3'- cGUCCUa---CGCGGauaUCGc------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 82009 0.67 0.797208
Target:  5'- aGgAGGA-GgGCggGUGGCaGCCgCGGCCa -3'
miRNA:   3'- -CgUCCUaCgCGgaUAUCG-CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 58934 0.67 0.770238
Target:  5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3'
miRNA:   3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 167261 0.66 0.847105
Target:  5'- cGCAGGG-GCGUUgGUGGCggaGUCUGGCa -3'
miRNA:   3'- -CGUCCUaCGCGGaUAUCG---CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 63324 0.66 0.847105
Target:  5'- gGCAGGuggGgGCCUGacGCGgaUGGCCa -3'
miRNA:   3'- -CGUCCua-CgCGGAUauCGCggGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 50527 0.66 0.847105
Target:  5'- -gGGGuGUGCGCCgg-GGCGgCCaaGCCg -3'
miRNA:   3'- cgUCC-UACGCGGauaUCGC-GGgcCGG- -5'
33610 3' -58.6 NC_007605.1 + 136862 0.66 0.839214
Target:  5'- aCAGGcccUGCGCCgggAGaCGCUguccuaCGGCCa -3'
miRNA:   3'- cGUCCu--ACGCGGauaUC-GCGG------GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 171244 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 170706 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 111511 0.66 0.847105
Target:  5'- aGCuGGGAUacaGCCUGacgGGCGCCCucaGGCg -3'
miRNA:   3'- -CG-UCCUAcg-CGGAUa--UCGCGGG---CCGg -5'
33610 3' -58.6 NC_007605.1 + 52869 0.66 0.8229
Target:  5'- aGUAGGAgucgGCGgCggcGGCGCUgGGCg -3'
miRNA:   3'- -CGUCCUa---CGCgGauaUCGCGGgCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.