miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 152632 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 158769 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 155700 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 149563 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 146494 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 143425 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 116561 0.68 0.742213
Target:  5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3'
miRNA:   3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 140356 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 137287 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 42797 0.67 0.751658
Target:  5'- cGCAGGGUGCugugGCUgg-GGaGCCCcGCCa -3'
miRNA:   3'- -CGUCCUACG----CGGauaUCgCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 118252 0.67 0.751658
Target:  5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3'
miRNA:   3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52035 0.67 0.755408
Target:  5'- -uGGGA-GUGCCaUAaGGCauaagauuucucaggGCCCGGCCg -3'
miRNA:   3'- cgUCCUaCGCGG-AUaUCG---------------CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 143532 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 158876 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 146601 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 140463 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 149670 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 155807 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 152738 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 137394 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.