miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 61474 0.67 0.76932
Target:  5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3'
miRNA:   3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 91741 0.67 0.770238
Target:  5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3'
miRNA:   3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 113801 0.67 0.770238
Target:  5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3'
miRNA:   3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 58934 0.67 0.770238
Target:  5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3'
miRNA:   3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 34760 0.67 0.779357
Target:  5'- cGUAGGAcaGCGUCUcccGGCGCagGGCCu -3'
miRNA:   3'- -CGUCCUa-CGCGGAua-UCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 102243 0.67 0.78835
Target:  5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3'
miRNA:   3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 14237 0.67 0.796329
Target:  5'- gGCGGGAUGCggggaacGCCaccacaccGGUGCCCcccacGGCCc -3'
miRNA:   3'- -CGUCCUACG-------CGGaua-----UCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 82009 0.67 0.797208
Target:  5'- aGgAGGA-GgGCggGUGGCaGCCgCGGCCa -3'
miRNA:   3'- -CgUCCUaCgCGgaUAUCG-CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 2698 0.67 0.797208
Target:  5'- cCAGGGcgGCgGCCc--GGCGCCaacaGGCCu -3'
miRNA:   3'- cGUCCUa-CG-CGGauaUCGCGGg---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 55452 0.67 0.797208
Target:  5'- uCAGGAggggGCGCUga-GGCcucacauCCCGGCCc -3'
miRNA:   3'- cGUCCUa---CGCGGauaUCGc------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38310 0.67 0.797208
Target:  5'- gGCGGGGcugGCGCag--AGCGCCCucCCg -3'
miRNA:   3'- -CGUCCUa--CGCGgauaUCGCGGGccGG- -5'
33610 3' -58.6 NC_007605.1 + 121242 0.67 0.797208
Target:  5'- aCGGGG-GCGCU---GGCGgCCGGCg -3'
miRNA:   3'- cGUCCUaCGCGGauaUCGCgGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 169647 0.66 0.805925
Target:  5'- uCGGGggGCGCCgccgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua-UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 119421 0.66 0.805925
Target:  5'- aGCucuGGcacucauUGCGCCcgcuggAGgGCCCGGUCg -3'
miRNA:   3'- -CGu--CCu------ACGCGGaua---UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12109 0.66 0.805925
Target:  5'- cCGGGAga-GCCcgGaGGUGCCCcGGCCg -3'
miRNA:   3'- cGUCCUacgCGGa-UaUCGCGGG-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 12957 0.66 0.805925
Target:  5'- cGUAGGGUGCuaagcgugucguGCUgcUAGcCGCCCuGGCg -3'
miRNA:   3'- -CGUCCUACG------------CGGauAUC-GCGGG-CCGg -5'
33610 3' -58.6 NC_007605.1 + 160600 0.66 0.814491
Target:  5'- aGgAGGAUG-GCCUcca--GCUCGGCCa -3'
miRNA:   3'- -CgUCCUACgCGGAuaucgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 101387 0.66 0.8229
Target:  5'- cGUGGGAgGCGaaUGUAGC-CCCuaGGCCu -3'
miRNA:   3'- -CGUCCUaCGCggAUAUCGcGGG--CCGG- -5'
33610 3' -58.6 NC_007605.1 + 96286 0.66 0.8229
Target:  5'- -gAGGAgGUGCCga----GCCUGGCCa -3'
miRNA:   3'- cgUCCUaCGCGGauaucgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52869 0.66 0.8229
Target:  5'- aGUAGGAgucgGCGgCggcGGCGCUgGGCg -3'
miRNA:   3'- -CGUCCUa---CGCgGauaUCGCGGgCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.