miRNA display CGI


Results 81 - 100 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 101387 0.66 0.8229
Target:  5'- cGUGGGAgGCGaaUGUAGC-CCCuaGGCCu -3'
miRNA:   3'- -CGUCCUaCGCggAUAUCGcGGG--CCGG- -5'
33610 3' -58.6 NC_007605.1 + 96286 0.66 0.8229
Target:  5'- -gAGGAgGUGCCga----GCCUGGCCa -3'
miRNA:   3'- cgUCCUaCGCGGauaucgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39172 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39297 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38298 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 33892 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39422 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39547 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39672 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39047 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38798 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38673 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 18547 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 21616 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 24685 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 27754 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 30823 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38423 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38548 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12409 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.