Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 12957 | 0.66 | 0.805925 |
Target: 5'- cGUAGGGUGCuaagcgugucguGCUgcUAGcCGCCCuGGCg -3' miRNA: 3'- -CGUCCUACG------------CGGauAUC-GCGGG-CCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 119421 | 0.66 | 0.805925 |
Target: 5'- aGCucuGGcacucauUGCGCCcgcuggAGgGCCCGGUCg -3' miRNA: 3'- -CGu--CCu------ACGCGGaua---UCgCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 82009 | 0.67 | 0.797208 |
Target: 5'- aGgAGGA-GgGCggGUGGCaGCCgCGGCCa -3' miRNA: 3'- -CgUCCUaCgCGgaUAUCG-CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 2698 | 0.67 | 0.797208 |
Target: 5'- cCAGGGcgGCgGCCc--GGCGCCaacaGGCCu -3' miRNA: 3'- cGUCCUa-CG-CGGauaUCGCGGg---CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 55452 | 0.67 | 0.797208 |
Target: 5'- uCAGGAggggGCGCUga-GGCcucacauCCCGGCCc -3' miRNA: 3'- cGUCCUa---CGCGGauaUCGc------GGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 121242 | 0.67 | 0.797208 |
Target: 5'- aCGGGG-GCGCU---GGCGgCCGGCg -3' miRNA: 3'- cGUCCUaCGCGGauaUCGCgGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38310 | 0.67 | 0.797208 |
Target: 5'- gGCGGGGcugGCGCag--AGCGCCCucCCg -3' miRNA: 3'- -CGUCCUa--CGCGgauaUCGCGGGccGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 14237 | 0.67 | 0.796329 |
Target: 5'- gGCGGGAUGCggggaacGCCaccacaccGGUGCCCcccacGGCCc -3' miRNA: 3'- -CGUCCUACG-------CGGaua-----UCGCGGG-----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 102243 | 0.67 | 0.78835 |
Target: 5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3' miRNA: 3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 34760 | 0.67 | 0.779357 |
Target: 5'- cGUAGGAcaGCGUCUcccGGCGCagGGCCu -3' miRNA: 3'- -CGUCCUa-CGCGGAua-UCGCGggCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 91741 | 0.67 | 0.770238 |
Target: 5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3' miRNA: 3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 58934 | 0.67 | 0.770238 |
Target: 5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3' miRNA: 3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 113801 | 0.67 | 0.770238 |
Target: 5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3' miRNA: 3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 61474 | 0.67 | 0.76932 |
Target: 5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3' miRNA: 3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 143532 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 155807 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 149670 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 146601 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 140463 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 137394 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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