miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 2698 0.67 0.797208
Target:  5'- cCAGGGcgGCgGCCc--GGCGCCaacaGGCCu -3'
miRNA:   3'- cGUCCUa-CG-CGGauaUCGCGGg---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 12109 0.66 0.805925
Target:  5'- cCGGGAga-GCCcgGaGGUGCCCcGGCCg -3'
miRNA:   3'- cGUCCUacgCGGa-UaUCGCGGG-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 12188 0.68 0.703602
Target:  5'- cGCaAGGAgcaguaccUGCGCCagGUGGCcaccgaggGUCUGGCCa -3'
miRNA:   3'- -CG-UCCU--------ACGCGGa-UAUCG--------CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12409 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12771 0.68 0.72209
Target:  5'- -gGGGGcgguccuugauccUGCGCCg--GGCGgacgcggucagcCCCGGCCa -3'
miRNA:   3'- cgUCCU-------------ACGCGGauaUCGC------------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 12957 0.66 0.805925
Target:  5'- cGUAGGGUGCuaagcgugucguGCUgcUAGcCGCCCuGGCg -3'
miRNA:   3'- -CGUCCUACG------------CGGauAUC-GCGGG-CCGg -5'
33610 3' -58.6 NC_007605.1 + 13473 0.69 0.634134
Target:  5'- aCGGGGUGCGCCgcUA-CGCCa-GCCa -3'
miRNA:   3'- cGUCCUACGCGGauAUcGCGGgcCGG- -5'
33610 3' -58.6 NC_007605.1 + 14237 0.67 0.796329
Target:  5'- gGCGGGAUGCggggaacGCCaccacaccGGUGCCCcccacGGCCc -3'
miRNA:   3'- -CGUCCUACG-------CGGaua-----UCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 15478 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 18547 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 21616 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 24685 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 27754 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 28465 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 30823 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 33892 0.66 0.831143
Target:  5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3'
miRNA:   3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 34599 0.73 0.442362
Target:  5'- gGguGGAggcUGCGCCUG-AGCuGCCUGGUg -3'
miRNA:   3'- -CguCCU---ACGCGGAUaUCG-CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 34760 0.67 0.779357
Target:  5'- cGUAGGAcaGCGUCUcccGGCGCagGGCCu -3'
miRNA:   3'- -CGUCCUa-CGCGGAua-UCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 35164 0.66 0.839214
Target:  5'- cGUAGGAagGCGCg-GUGGCuauuGCCUGGUg -3'
miRNA:   3'- -CGUCCUa-CGCGgaUAUCG----CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 37364 0.7 0.624142
Target:  5'- gGC-GGAaaaGCGUCUGgacuggauaGGCGCCCGGCa -3'
miRNA:   3'- -CGuCCUa--CGCGGAUa--------UCGCGGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.