Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 37447 | 0.7 | 0.614156 |
Target: 5'- aGCAGGGacgauaggUGUagacGCCggGUGGcCGCCuCGGCCa -3' miRNA: 3'- -CGUCCU--------ACG----CGGa-UAUC-GCGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38298 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38310 | 0.67 | 0.797208 |
Target: 5'- gGCGGGGcugGCGCag--AGCGCCCucCCg -3' miRNA: 3'- -CGUCCUa--CGCGgauaUCGCGGGccGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38423 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38548 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38673 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38798 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38921 | 0.71 | 0.554743 |
Target: 5'- aGCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- -CGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39047 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39172 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39297 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39422 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39547 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39672 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 40214 | 0.66 | 0.838415 |
Target: 5'- gGCAGGggGUccccauggcacagGCCUAgggguccagggGGCaGCCgCGGCCc -3' miRNA: 3'- -CGUCCuaCG-------------CGGAUa----------UCG-CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 42797 | 0.67 | 0.751658 |
Target: 5'- cGCAGGGUGCugugGCUgg-GGaGCCCcGCCa -3' miRNA: 3'- -CGUCCUACG----CGGauaUCgCGGGcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 48678 | 0.68 | 0.732676 |
Target: 5'- aGCAGGc----CCUGauGCGCCUGGCCg -3' miRNA: 3'- -CGUCCuacgcGGAUauCGCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 50381 | 0.71 | 0.564553 |
Target: 5'- -gAGGAcggGCGCCggccgccAGCGCCCccguGGCCu -3' miRNA: 3'- cgUCCUa--CGCGGaua----UCGCGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 50527 | 0.66 | 0.847105 |
Target: 5'- -gGGGuGUGCGCCgg-GGCGgCCaaGCCg -3' miRNA: 3'- cgUCC-UACGCGGauaUCGC-GGgcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 51667 | 0.72 | 0.50656 |
Target: 5'- cCAGGAUG-GCCacgguggGGgGCCUGGCCu -3' miRNA: 3'- cGUCCUACgCGGaua----UCgCGGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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