miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 52035 0.67 0.755408
Target:  5'- -uGGGA-GUGCCaUAaGGCauaagauuucucaggGCCCGGCCg -3'
miRNA:   3'- cgUCCUaCGCGG-AUaUCG---------------CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52869 0.66 0.8229
Target:  5'- aGUAGGAgucgGCGgCggcGGCGCUgGGCg -3'
miRNA:   3'- -CGUCCUa---CGCgGauaUCGCGGgCCGg -5'
33610 3' -58.6 NC_007605.1 + 52948 0.7 0.594229
Target:  5'- uGCGGGGgaccaauaGCUUGggGGCGUCCGGCUg -3'
miRNA:   3'- -CGUCCUacg-----CGGAUa-UCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 55452 0.67 0.797208
Target:  5'- uCAGGAggggGCGCUga-GGCcucacauCCCGGCCc -3'
miRNA:   3'- cGUCCUa---CGCGGauaUCGc------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 55741 0.73 0.460251
Target:  5'- gGCGGGAgagauggggGCGCCU--GGgGCCgaGGCCa -3'
miRNA:   3'- -CGUCCUa--------CGCGGAuaUCgCGGg-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 58934 0.67 0.770238
Target:  5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3'
miRNA:   3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 60095 0.74 0.399429
Target:  5'- gGUAGGcgacgcUGCGCCUGagGGCGCCCgucaGGCUg -3'
miRNA:   3'- -CGUCCu-----ACGCGGAUa-UCGCGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 60257 0.69 0.642127
Target:  5'- cCAGGAgGCGCCUucugaggGUGGCcgugucgGCCgUGGCCa -3'
miRNA:   3'- cGUCCUaCGCGGA-------UAUCG-------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 61474 0.67 0.76932
Target:  5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3'
miRNA:   3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 63324 0.66 0.847105
Target:  5'- gGCAGGuggGgGCCUGacGCGgaUGGCCa -3'
miRNA:   3'- -CGUCCua-CgCGGAUauCGCggGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 65501 0.66 0.847105
Target:  5'- cCAGGGauauggccuccaUGgGCCUcgggGUgcAGgGCCUGGCCg -3'
miRNA:   3'- cGUCCU------------ACgCGGA----UA--UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 67047 0.72 0.497131
Target:  5'- uGCGGGuccgGgGCCUAaugccUGGCaucuGCCUGGCCa -3'
miRNA:   3'- -CGUCCua--CgCGGAU-----AUCG----CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 67971 0.7 0.614156
Target:  5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3'
miRNA:   3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 72472 0.71 0.544984
Target:  5'- cGCGGGAgccgGCgGCCUcggaGGUGCCCGGgUg -3'
miRNA:   3'- -CGUCCUa---CG-CGGAua--UCGCGGGCCgG- -5'
33610 3' -58.6 NC_007605.1 + 78326 0.69 0.683918
Target:  5'- cCGGuGAUGCGCCUGacguuGUGCC-GGCUg -3'
miRNA:   3'- cGUC-CUACGCGGAUau---CGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 82009 0.67 0.797208
Target:  5'- aGgAGGA-GgGCggGUGGCaGCCgCGGCCa -3'
miRNA:   3'- -CgUCCUaCgCGgaUAUCG-CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 84292 0.66 0.831143
Target:  5'- cGCuucacuGGGUGCGUCUugGGCG-UgGGCCa -3'
miRNA:   3'- -CGu-----CCUACGCGGAuaUCGCgGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 87892 0.72 0.478516
Target:  5'- cGCGGGGccucacauagUGaCGCCUccuucCGCCCGGCCu -3'
miRNA:   3'- -CGUCCU----------AC-GCGGAuauc-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 91741 0.67 0.770238
Target:  5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3'
miRNA:   3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 96286 0.66 0.8229
Target:  5'- -gAGGAgGUGCCga----GCCUGGCCa -3'
miRNA:   3'- cgUCCUaCGCGGauaucgCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.