miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 97890 0.76 0.307917
Target:  5'- aCAGGggGCGCCUuccccUGGC-CUCGGCCg -3'
miRNA:   3'- cGUCCuaCGCGGAu----AUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 101387 0.66 0.8229
Target:  5'- cGUGGGAgGCGaaUGUAGC-CCCuaGGCCu -3'
miRNA:   3'- -CGUCCUaCGCggAUAUCGcGGG--CCGG- -5'
33610 3' -58.6 NC_007605.1 + 101830 0.7 0.574408
Target:  5'- --uGGAcgagaGCGCCUcUGGCGCCCucggcuccucGGCCa -3'
miRNA:   3'- cguCCUa----CGCGGAuAUCGCGGG----------CCGG- -5'
33610 3' -58.6 NC_007605.1 + 102243 0.67 0.78835
Target:  5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3'
miRNA:   3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 105648 0.77 0.244598
Target:  5'- aGCAGGAgacccuCGCUgUGUGGCGCCCGGUg -3'
miRNA:   3'- -CGUCCUac----GCGG-AUAUCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 107322 0.66 0.8229
Target:  5'- cGCuGGAgacgaUGCGCUcGUAG-GCCgGGCUc -3'
miRNA:   3'- -CGuCCU-----ACGCGGaUAUCgCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 107479 0.69 0.634134
Target:  5'- -aAGGcgGUGgagcaGGCGCCCGGCCa -3'
miRNA:   3'- cgUCCuaCGCggauaUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 110345 0.69 0.654105
Target:  5'- uGCuauGGGUccgcuacaGcCGCCUGUGGCaggcCCCGGCCc -3'
miRNA:   3'- -CGu--CCUA--------C-GCGGAUAUCGc---GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 111317 0.68 0.6928
Target:  5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3'
miRNA:   3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 111511 0.66 0.847105
Target:  5'- aGCuGGGAUacaGCCUGacgGGCGCCCucaGGCg -3'
miRNA:   3'- -CG-UCCUAcg-CGGAUa--UCGCGGG---CCGg -5'
33610 3' -58.6 NC_007605.1 + 112028 0.71 0.544984
Target:  5'- gGCAGGAacGCGagca-AGCGCCgGGCCa -3'
miRNA:   3'- -CGUCCUa-CGCggauaUCGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 112753 0.66 0.8229
Target:  5'- gGCuGGAUGC-CCUcauGCGCCaagCGGCa -3'
miRNA:   3'- -CGuCCUACGcGGAuauCGCGG---GCCGg -5'
33610 3' -58.6 NC_007605.1 + 113801 0.67 0.770238
Target:  5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3'
miRNA:   3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 116561 0.68 0.742213
Target:  5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3'
miRNA:   3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 117923 0.71 0.564553
Target:  5'- aGCuGGggGCGCg---GGUGCCUGGCUg -3'
miRNA:   3'- -CGuCCuaCGCGgauaUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 118252 0.67 0.751658
Target:  5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3'
miRNA:   3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 119421 0.66 0.805925
Target:  5'- aGCucuGGcacucauUGCGCCcgcuggAGgGCCCGGUCg -3'
miRNA:   3'- -CGu--CCu------ACGCGGaua---UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 120979 0.66 0.831143
Target:  5'- uCGGGcUGCGaCCccguGCGCCCgugguGGCCg -3'
miRNA:   3'- cGUCCuACGC-GGauauCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 121242 0.67 0.797208
Target:  5'- aCGGGG-GCGCU---GGCGgCCGGCg -3'
miRNA:   3'- cGUCCUaCGCGGauaUCGCgGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 121594 0.7 0.604183
Target:  5'- aGCAGcGucccauUGCGCUg--AGCGCCCaccuuGGCCu -3'
miRNA:   3'- -CGUC-Cu-----ACGCGGauaUCGCGGG-----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.