Results 101 - 114 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 155700 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 155807 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 158769 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 158876 | 0.67 | 0.761003 |
Target: 5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3' miRNA: 3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 158907 | 0.69 | 0.644124 |
Target: 5'- uUAGGAcG-GCCUcgcgcAGCGCCCGGCa -3' miRNA: 3'- cGUCCUaCgCGGAua---UCGCGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 160013 | 0.74 | 0.367061 |
Target: 5'- cCGGGAccGCGCCcuccucugGGcCGCCCGGCCu -3' miRNA: 3'- cGUCCUa-CGCGGaua-----UC-GCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 160600 | 0.66 | 0.814491 |
Target: 5'- aGgAGGAUG-GCCUcca--GCUCGGCCa -3' miRNA: 3'- -CgUCCUACgCGGAuaucgCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 165806 | 0.74 | 0.407802 |
Target: 5'- -uGGGGUGauCCUGUAGCGCCgCGGUUu -3' miRNA: 3'- cgUCCUACgcGGAUAUCGCGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 167261 | 0.66 | 0.847105 |
Target: 5'- cGCAGGG-GCGUUgGUGGCggaGUCUGGCa -3' miRNA: 3'- -CGUCCUaCGCGGaUAUCG---CGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 168912 | 0.68 | 0.713362 |
Target: 5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3' miRNA: 3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 169647 | 0.66 | 0.805925 |
Target: 5'- uCGGGggGCGCCgccgGGCGCa--GCCa -3' miRNA: 3'- cGUCCuaCGCGGaua-UCGCGggcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 170184 | 0.66 | 0.839214 |
Target: 5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3' miRNA: 3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 170706 | 0.66 | 0.839214 |
Target: 5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3' miRNA: 3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 171244 | 0.66 | 0.839214 |
Target: 5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3' miRNA: 3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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