miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 171244 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 170706 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 170184 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 169647 0.66 0.805925
Target:  5'- uCGGGggGCGCCgccgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua-UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 168912 0.68 0.713362
Target:  5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3'
miRNA:   3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 167261 0.66 0.847105
Target:  5'- cGCAGGG-GCGUUgGUGGCggaGUCUGGCa -3'
miRNA:   3'- -CGUCCUaCGCGGaUAUCG---CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 165806 0.74 0.407802
Target:  5'- -uGGGGUGauCCUGUAGCGCCgCGGUUu -3'
miRNA:   3'- cgUCCUACgcGGAUAUCGCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 160600 0.66 0.814491
Target:  5'- aGgAGGAUG-GCCUcca--GCUCGGCCa -3'
miRNA:   3'- -CgUCCUACgCGGAuaucgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 160013 0.74 0.367061
Target:  5'- cCGGGAccGCGCCcuccucugGGcCGCCCGGCCu -3'
miRNA:   3'- cGUCCUa-CGCGGaua-----UC-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 158907 0.69 0.644124
Target:  5'- uUAGGAcG-GCCUcgcgcAGCGCCCGGCa -3'
miRNA:   3'- cGUCCUaCgCGGAua---UCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 158876 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 158769 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 155807 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 155700 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 155124 1.13 0.000986
Target:  5'- aGCAGGAUGCGCCUAUAGCGCCCGGCCu -3'
miRNA:   3'- -CGUCCUACGCGGAUAUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 154153 0.69 0.66407
Target:  5'- aGCAGcuucuuGAUG-GCCUu--GCGCuuGGCCa -3'
miRNA:   3'- -CGUC------CUACgCGGAuauCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 152738 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 152632 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 149670 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 149563 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.