miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 146601 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 146494 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 143532 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 143425 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 141706 0.69 0.66407
Target:  5'- gGCGGGggGUGCCggcuGCaGCCgGGUCc -3'
miRNA:   3'- -CGUCCuaCGCGGauauCG-CGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 140463 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 140356 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 137394 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 137287 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 136862 0.66 0.839214
Target:  5'- aCAGGcccUGCGCCgggAGaCGCUguccuaCGGCCa -3'
miRNA:   3'- cGUCCu--ACGCGGauaUC-GCGG------GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 133440 0.72 0.478516
Target:  5'- cCGGGuugGUgGCaCUGUuGCGCCCGGCCc -3'
miRNA:   3'- cGUCCua-CG-CG-GAUAuCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 131280 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 126671 0.7 0.584302
Target:  5'- uGCuGGAUGUGCC-AUgccccaggcuaAGgGCCUGGCUg -3'
miRNA:   3'- -CGuCCUACGCGGaUA-----------UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 123594 0.69 0.66407
Target:  5'- aGUAGGucucGCGCCUGUcucgcGGgGCCgGGgCCg -3'
miRNA:   3'- -CGUCCua--CGCGGAUA-----UCgCGGgCC-GG- -5'
33610 3' -58.6 NC_007605.1 + 121594 0.7 0.604183
Target:  5'- aGCAGcGucccauUGCGCUg--AGCGCCCaccuuGGCCu -3'
miRNA:   3'- -CGUC-Cu-----ACGCGGauaUCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 121242 0.67 0.797208
Target:  5'- aCGGGG-GCGCU---GGCGgCCGGCg -3'
miRNA:   3'- cGUCCUaCGCGGauaUCGCgGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 120979 0.66 0.831143
Target:  5'- uCGGGcUGCGaCCccguGCGCCCgugguGGCCg -3'
miRNA:   3'- cGUCCuACGC-GGauauCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 119421 0.66 0.805925
Target:  5'- aGCucuGGcacucauUGCGCCcgcuggAGgGCCCGGUCg -3'
miRNA:   3'- -CGu--CCu------ACGCGGaua---UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 118252 0.67 0.751658
Target:  5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3'
miRNA:   3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 117923 0.71 0.564553
Target:  5'- aGCuGGggGCGCg---GGUGCCUGGCUg -3'
miRNA:   3'- -CGuCCuaCGCGgauaUCGCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.