Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 116561 | 0.68 | 0.742213 |
Target: 5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3' miRNA: 3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 113801 | 0.67 | 0.770238 |
Target: 5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3' miRNA: 3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 112753 | 0.66 | 0.8229 |
Target: 5'- gGCuGGAUGC-CCUcauGCGCCaagCGGCa -3' miRNA: 3'- -CGuCCUACGcGGAuauCGCGG---GCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 112028 | 0.71 | 0.544984 |
Target: 5'- gGCAGGAacGCGagca-AGCGCCgGGCCa -3' miRNA: 3'- -CGUCCUa-CGCggauaUCGCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 111511 | 0.66 | 0.847105 |
Target: 5'- aGCuGGGAUacaGCCUGacgGGCGCCCucaGGCg -3' miRNA: 3'- -CG-UCCUAcg-CGGAUa--UCGCGGG---CCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 111317 | 0.68 | 0.6928 |
Target: 5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3' miRNA: 3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 110345 | 0.69 | 0.654105 |
Target: 5'- uGCuauGGGUccgcuacaGcCGCCUGUGGCaggcCCCGGCCc -3' miRNA: 3'- -CGu--CCUA--------C-GCGGAUAUCGc---GGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 107479 | 0.69 | 0.634134 |
Target: 5'- -aAGGcgGUGgagcaGGCGCCCGGCCa -3' miRNA: 3'- cgUCCuaCGCggauaUCGCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 107322 | 0.66 | 0.8229 |
Target: 5'- cGCuGGAgacgaUGCGCUcGUAG-GCCgGGCUc -3' miRNA: 3'- -CGuCCU-----ACGCGGaUAUCgCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 105648 | 0.77 | 0.244598 |
Target: 5'- aGCAGGAgacccuCGCUgUGUGGCGCCCGGUg -3' miRNA: 3'- -CGUCCUac----GCGG-AUAUCGCGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 102243 | 0.67 | 0.78835 |
Target: 5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3' miRNA: 3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 101830 | 0.7 | 0.574408 |
Target: 5'- --uGGAcgagaGCGCCUcUGGCGCCCucggcuccucGGCCa -3' miRNA: 3'- cguCCUa----CGCGGAuAUCGCGGG----------CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 101387 | 0.66 | 0.8229 |
Target: 5'- cGUGGGAgGCGaaUGUAGC-CCCuaGGCCu -3' miRNA: 3'- -CGUCCUaCGCggAUAUCGcGGG--CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 97890 | 0.76 | 0.307917 |
Target: 5'- aCAGGggGCGCCUuccccUGGC-CUCGGCCg -3' miRNA: 3'- cGUCCuaCGCGGAu----AUCGcGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 96286 | 0.66 | 0.8229 |
Target: 5'- -gAGGAgGUGCCga----GCCUGGCCa -3' miRNA: 3'- cgUCCUaCGCGGauaucgCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 91741 | 0.67 | 0.770238 |
Target: 5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3' miRNA: 3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 87892 | 0.72 | 0.478516 |
Target: 5'- cGCGGGGccucacauagUGaCGCCUccuucCGCCCGGCCu -3' miRNA: 3'- -CGUCCU----------AC-GCGGAuauc-GCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 84292 | 0.66 | 0.831143 |
Target: 5'- cGCuucacuGGGUGCGUCUugGGCG-UgGGCCa -3' miRNA: 3'- -CGu-----CCUACGCGGAuaUCGCgGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 82009 | 0.67 | 0.797208 |
Target: 5'- aGgAGGA-GgGCggGUGGCaGCCgCGGCCa -3' miRNA: 3'- -CgUCCUaCgCGgaUAUCG-CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 78326 | 0.69 | 0.683918 |
Target: 5'- cCGGuGAUGCGCCUGacguuGUGCC-GGCUg -3' miRNA: 3'- cGUC-CUACGCGGAUau---CGCGGgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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