Results 61 - 80 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 72472 | 0.71 | 0.544984 |
Target: 5'- cGCGGGAgccgGCgGCCUcggaGGUGCCCGGgUg -3' miRNA: 3'- -CGUCCUa---CG-CGGAua--UCGCGGGCCgG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 67971 | 0.7 | 0.614156 |
Target: 5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3' miRNA: 3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 67047 | 0.72 | 0.497131 |
Target: 5'- uGCGGGuccgGgGCCUAaugccUGGCaucuGCCUGGCCa -3' miRNA: 3'- -CGUCCua--CgCGGAU-----AUCG----CGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 65501 | 0.66 | 0.847105 |
Target: 5'- cCAGGGauauggccuccaUGgGCCUcgggGUgcAGgGCCUGGCCg -3' miRNA: 3'- cGUCCU------------ACgCGGA----UA--UCgCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 63324 | 0.66 | 0.847105 |
Target: 5'- gGCAGGuggGgGCCUGacGCGgaUGGCCa -3' miRNA: 3'- -CGUCCua-CgCGGAUauCGCggGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 61474 | 0.67 | 0.76932 |
Target: 5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3' miRNA: 3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 60257 | 0.69 | 0.642127 |
Target: 5'- cCAGGAgGCGCCUucugaggGUGGCcgugucgGCCgUGGCCa -3' miRNA: 3'- cGUCCUaCGCGGA-------UAUCG-------CGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 60095 | 0.74 | 0.399429 |
Target: 5'- gGUAGGcgacgcUGCGCCUGagGGCGCCCgucaGGCUg -3' miRNA: 3'- -CGUCCu-----ACGCGGAUa-UCGCGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 58934 | 0.67 | 0.770238 |
Target: 5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3' miRNA: 3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 55741 | 0.73 | 0.460251 |
Target: 5'- gGCGGGAgagauggggGCGCCU--GGgGCCgaGGCCa -3' miRNA: 3'- -CGUCCUa--------CGCGGAuaUCgCGGg-CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 55452 | 0.67 | 0.797208 |
Target: 5'- uCAGGAggggGCGCUga-GGCcucacauCCCGGCCc -3' miRNA: 3'- cGUCCUa---CGCGGauaUCGc------GGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 52948 | 0.7 | 0.594229 |
Target: 5'- uGCGGGGgaccaauaGCUUGggGGCGUCCGGCUg -3' miRNA: 3'- -CGUCCUacg-----CGGAUa-UCGCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 52869 | 0.66 | 0.8229 |
Target: 5'- aGUAGGAgucgGCGgCggcGGCGCUgGGCg -3' miRNA: 3'- -CGUCCUa---CGCgGauaUCGCGGgCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 52035 | 0.67 | 0.755408 |
Target: 5'- -uGGGA-GUGCCaUAaGGCauaagauuucucaggGCCCGGCCg -3' miRNA: 3'- cgUCCUaCGCGG-AUaUCG---------------CGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 51667 | 0.72 | 0.50656 |
Target: 5'- cCAGGAUG-GCCacgguggGGgGCCUGGCCu -3' miRNA: 3'- cGUCCUACgCGGaua----UCgCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 50527 | 0.66 | 0.847105 |
Target: 5'- -gGGGuGUGCGCCgg-GGCGgCCaaGCCg -3' miRNA: 3'- cgUCC-UACGCGGauaUCGC-GGgcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 50381 | 0.71 | 0.564553 |
Target: 5'- -gAGGAcggGCGCCggccgccAGCGCCCccguGGCCu -3' miRNA: 3'- cgUCCUa--CGCGGaua----UCGCGGG----CCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 48678 | 0.68 | 0.732676 |
Target: 5'- aGCAGGc----CCUGauGCGCCUGGCCg -3' miRNA: 3'- -CGUCCuacgcGGAUauCGCGGGCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 42797 | 0.67 | 0.751658 |
Target: 5'- cGCAGGGUGCugugGCUgg-GGaGCCCcGCCa -3' miRNA: 3'- -CGUCCUACG----CGGauaUCgCGGGcCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 40214 | 0.66 | 0.838415 |
Target: 5'- gGCAGGggGUccccauggcacagGCCUAgggguccagggGGCaGCCgCGGCCc -3' miRNA: 3'- -CGUCCuaCG-------------CGGAUa----------UCG-CGG-GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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