Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 39672 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39547 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39422 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39297 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39172 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 39047 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38921 | 0.71 | 0.554743 |
Target: 5'- aGCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- -CGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38798 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38673 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38548 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38423 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38310 | 0.67 | 0.797208 |
Target: 5'- gGCGGGGcugGCGCag--AGCGCCCucCCg -3' miRNA: 3'- -CGUCCUa--CGCGgauaUCGCGGGccGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 38298 | 0.66 | 0.831143 |
Target: 5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3' miRNA: 3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 37447 | 0.7 | 0.614156 |
Target: 5'- aGCAGGGacgauaggUGUagacGCCggGUGGcCGCCuCGGCCa -3' miRNA: 3'- -CGUCCU--------ACG----CGGa-UAUC-GCGG-GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 37364 | 0.7 | 0.624142 |
Target: 5'- gGC-GGAaaaGCGUCUGgacuggauaGGCGCCCGGCa -3' miRNA: 3'- -CGuCCUa--CGCGGAUa--------UCGCGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 35164 | 0.66 | 0.839214 |
Target: 5'- cGUAGGAagGCGCg-GUGGCuauuGCCUGGUg -3' miRNA: 3'- -CGUCCUa-CGCGgaUAUCG----CGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 34760 | 0.67 | 0.779357 |
Target: 5'- cGUAGGAcaGCGUCUcccGGCGCagGGCCu -3' miRNA: 3'- -CGUCCUa-CGCGGAua-UCGCGggCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 34599 | 0.73 | 0.442362 |
Target: 5'- gGguGGAggcUGCGCCUG-AGCuGCCUGGUg -3' miRNA: 3'- -CguCCU---ACGCGGAUaUCG-CGGGCCGg -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 33892 | 0.66 | 0.831143 |
Target: 5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3' miRNA: 3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5' |
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33610 | 3' | -58.6 | NC_007605.1 | + | 30823 | 0.66 | 0.831143 |
Target: 5'- -gAGGAgGCGCCcggaGUGGgGCCgguCGGCUg -3' miRNA: 3'- cgUCCUaCGCGGa---UAUCgCGG---GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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