miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 78326 0.69 0.683918
Target:  5'- cCGGuGAUGCGCCUGacguuGUGCC-GGCUg -3'
miRNA:   3'- cGUC-CUACGCGGAUau---CGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52948 0.7 0.594229
Target:  5'- uGCGGGGgaccaauaGCUUGggGGCGUCCGGCUg -3'
miRNA:   3'- -CGUCCUacg-----CGGAUa-UCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 121594 0.7 0.604183
Target:  5'- aGCAGcGucccauUGCGCUg--AGCGCCCaccuuGGCCu -3'
miRNA:   3'- -CGUC-Cu-----ACGCGGauaUCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 67971 0.7 0.614156
Target:  5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3'
miRNA:   3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 60257 0.69 0.642127
Target:  5'- cCAGGAgGCGCCUucugaggGUGGCcgugucgGCCgUGGCCa -3'
miRNA:   3'- cGUCCUaCGCGGA-------UAUCG-------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 158907 0.69 0.644124
Target:  5'- uUAGGAcG-GCCUcgcgcAGCGCCCGGCa -3'
miRNA:   3'- cGUCCUaCgCGGAua---UCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 123594 0.69 0.66407
Target:  5'- aGUAGGucucGCGCCUGUcucgcGGgGCCgGGgCCg -3'
miRNA:   3'- -CGUCCua--CGCGGAUA-----UCgCGGgCC-GG- -5'
33610 3' -58.6 NC_007605.1 + 154153 0.69 0.66407
Target:  5'- aGCAGcuucuuGAUG-GCCUu--GCGCuuGGCCa -3'
miRNA:   3'- -CGUC------CUACgCGGAuauCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 141706 0.69 0.66407
Target:  5'- gGCGGGggGUGCCggcuGCaGCCgGGUCc -3'
miRNA:   3'- -CGUCCuaCGCGGauauCG-CGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 101830 0.7 0.574408
Target:  5'- --uGGAcgagaGCGCCUcUGGCGCCCucggcuccucGGCCa -3'
miRNA:   3'- cguCCUa----CGCGGAuAUCGCGGG----------CCGG- -5'
33610 3' -58.6 NC_007605.1 + 50381 0.71 0.564553
Target:  5'- -gAGGAcggGCGCCggccgccAGCGCCCccguGGCCu -3'
miRNA:   3'- cgUCCUa--CGCGGaua----UCGCGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 38921 0.71 0.554743
Target:  5'- aGCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- -CGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 105648 0.77 0.244598
Target:  5'- aGCAGGAgacccuCGCUgUGUGGCGCCCGGUg -3'
miRNA:   3'- -CGUCCUac----GCGG-AUAUCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 160013 0.74 0.367061
Target:  5'- cCGGGAccGCGCCcuccucugGGcCGCCCGGCCu -3'
miRNA:   3'- cGUCCUa-CGCGGaua-----UC-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 60095 0.74 0.399429
Target:  5'- gGUAGGcgacgcUGCGCCUGagGGCGCCCgucaGGCUg -3'
miRNA:   3'- -CGUCCu-----ACGCGGAUa-UCGCGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 165806 0.74 0.407802
Target:  5'- -uGGGGUGauCCUGUAGCGCCgCGGUUu -3'
miRNA:   3'- cgUCCUACgcGGAUAUCGCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 55741 0.73 0.460251
Target:  5'- gGCGGGAgagauggggGCGCCU--GGgGCCgaGGCCa -3'
miRNA:   3'- -CGUCCUa--------CGCGGAuaUCgCGGg-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 87892 0.72 0.478516
Target:  5'- cGCGGGGccucacauagUGaCGCCUccuucCGCCCGGCCu -3'
miRNA:   3'- -CGUCCU----------AC-GCGGAuauc-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 67047 0.72 0.497131
Target:  5'- uGCGGGuccgGgGCCUAaugccUGGCaucuGCCUGGCCa -3'
miRNA:   3'- -CGUCCua--CgCGGAU-----AUCG----CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 51667 0.72 0.50656
Target:  5'- cCAGGAUG-GCCacgguggGGgGCCUGGCCu -3'
miRNA:   3'- cGUCCUACgCGGaua----UCgCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.