miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 60095 0.74 0.399429
Target:  5'- gGUAGGcgacgcUGCGCCUGagGGCGCCCgucaGGCUg -3'
miRNA:   3'- -CGUCCu-----ACGCGGAUa-UCGCGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 160013 0.74 0.367061
Target:  5'- cCGGGAccGCGCCcuccucugGGcCGCCCGGCCu -3'
miRNA:   3'- cGUCCUa-CGCGGaua-----UC-GCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 105648 0.77 0.244598
Target:  5'- aGCAGGAgacccuCGCUgUGUGGCGCCCGGUg -3'
miRNA:   3'- -CGUCCUac----GCGG-AUAUCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 155124 1.13 0.000986
Target:  5'- aGCAGGAUGCGCCUAUAGCGCCCGGCCu -3'
miRNA:   3'- -CGUCCUACGCGGAUAUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 121594 0.7 0.604183
Target:  5'- aGCAGcGucccauUGCGCUg--AGCGCCCaccuuGGCCu -3'
miRNA:   3'- -CGUC-Cu-----ACGCGGauaUCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 67971 0.7 0.614156
Target:  5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3'
miRNA:   3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 2698 0.67 0.797208
Target:  5'- cCAGGGcgGCgGCCc--GGCGCCaacaGGCCu -3'
miRNA:   3'- cGUCCUa-CG-CGGauaUCGCGGg---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 102243 0.67 0.78835
Target:  5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3'
miRNA:   3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 58934 0.67 0.770238
Target:  5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3'
miRNA:   3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 113801 0.67 0.770238
Target:  5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3'
miRNA:   3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 91741 0.67 0.770238
Target:  5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3'
miRNA:   3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 61474 0.67 0.76932
Target:  5'- cGCuGG-UGCGCCg--GGCucgucuguccacgGCCuCGGCCu -3'
miRNA:   3'- -CGuCCuACGCGGauaUCG-------------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52035 0.67 0.755408
Target:  5'- -uGGGA-GUGCCaUAaGGCauaagauuucucaggGCCCGGCCg -3'
miRNA:   3'- cgUCCUaCGCGG-AUaUCG---------------CGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 78326 0.69 0.683918
Target:  5'- cCGGuGAUGCGCCUGacguuGUGCC-GGCUg -3'
miRNA:   3'- cGUC-CUACGCGGAUau---CGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 141706 0.69 0.66407
Target:  5'- gGCGGGggGUGCCggcuGCaGCCgGGUCc -3'
miRNA:   3'- -CGUCCuaCGCGGauauCG-CGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 154153 0.69 0.66407
Target:  5'- aGCAGcuucuuGAUG-GCCUu--GCGCuuGGCCa -3'
miRNA:   3'- -CGUC------CUACgCGGAuauCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 123594 0.69 0.66407
Target:  5'- aGUAGGucucGCGCCUGUcucgcGGgGCCgGGgCCg -3'
miRNA:   3'- -CGUCCua--CGCGGAUA-----UCgCGGgCC-GG- -5'
33610 3' -58.6 NC_007605.1 + 158907 0.69 0.644124
Target:  5'- uUAGGAcG-GCCUcgcgcAGCGCCCGGCa -3'
miRNA:   3'- cGUCCUaCgCGGAua---UCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 60257 0.69 0.642127
Target:  5'- cCAGGAgGCGCCUucugaggGUGGCcgugucgGCCgUGGCCa -3'
miRNA:   3'- cGUCCUaCGCGGA-------UAUCG-------CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 111511 0.66 0.847105
Target:  5'- aGCuGGGAUacaGCCUGacgGGCGCCCucaGGCg -3'
miRNA:   3'- -CG-UCCUAcg-CGGAUa--UCGCGGG---CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.