Results 81 - 100 of 114 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 137287 | 0.68 | 0.742213 |
Target: 5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3' miRNA: 3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 126671 | 0.7 | 0.584302 |
Target: 5'- uGCuGGAUGUGCC-AUgccccaggcuaAGgGCCUGGCUg -3' miRNA: 3'- -CGuCCUACGCGGaUA-----------UCgCGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 117923 | 0.71 | 0.564553 |
Target: 5'- aGCuGGggGCGCg---GGUGCCUGGCUg -3' miRNA: 3'- -CGuCCuaCGCGgauaUCGCGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 72472 | 0.71 | 0.544984 |
Target: 5'- cGCGGGAgccgGCgGCCUcggaGGUGCCCGGgUg -3' miRNA: 3'- -CGUCCUa---CG-CGGAua--UCGCGGGCCgG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 112028 | 0.71 | 0.544984 |
Target: 5'- gGCAGGAacGCGagca-AGCGCCgGGCCa -3' miRNA: 3'- -CGUCCUa-CGCggauaUCGCGGgCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 131280 | 0.72 | 0.487782 |
Target: 5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3' miRNA: 3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 28465 | 0.72 | 0.487782 |
Target: 5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3' miRNA: 3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 133440 | 0.72 | 0.478516 |
Target: 5'- cCGGGuugGUgGCaCUGUuGCGCCCGGCCc -3' miRNA: 3'- cGUCCua-CG-CG-GAUAuCGCGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 34599 | 0.73 | 0.442362 |
Target: 5'- gGguGGAggcUGCGCCUG-AGCuGCCUGGUg -3' miRNA: 3'- -CguCCU---ACGCGGAUaUCG-CGGGCCGg -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 37447 | 0.7 | 0.614156 |
Target: 5'- aGCAGGGacgauaggUGUagacGCCggGUGGcCGCCuCGGCCa -3' miRNA: 3'- -CGUCCU--------ACG----CGGa-UAUC-GCGG-GCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 37364 | 0.7 | 0.624142 |
Target: 5'- gGC-GGAaaaGCGUCUGgacuggauaGGCGCCCGGCa -3' miRNA: 3'- -CGuCCUa--CGCGGAUa--------UCGCGGGCCGg -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 13473 | 0.69 | 0.634134 |
Target: 5'- aCGGGGUGCGCCgcUA-CGCCa-GCCa -3' miRNA: 3'- cGUCCUACGCGGauAUcGCGGgcCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 116561 | 0.68 | 0.742213 |
Target: 5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3' miRNA: 3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 48678 | 0.68 | 0.732676 |
Target: 5'- aGCAGGc----CCUGauGCGCCUGGCCg -3' miRNA: 3'- -CGUCCuacgcGGAUauCGCGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 12771 | 0.68 | 0.72209 |
Target: 5'- -gGGGGcgguccuugauccUGCGCCg--GGCGgacgcggucagcCCCGGCCa -3' miRNA: 3'- cgUCCU-------------ACGCGGauaUCGC------------GGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 168912 | 0.68 | 0.713362 |
Target: 5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3' miRNA: 3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 12188 | 0.68 | 0.703602 |
Target: 5'- cGCaAGGAgcaguaccUGCGCCagGUGGCcaccgaggGUCUGGCCa -3' miRNA: 3'- -CG-UCCU--------ACGCGGa-UAUCG--------CGGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 111317 | 0.68 | 0.6928 |
Target: 5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3' miRNA: 3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 110345 | 0.69 | 0.654105 |
Target: 5'- uGCuauGGGUccgcuacaGcCGCCUGUGGCaggcCCCGGCCc -3' miRNA: 3'- -CGu--CCUA--------C-GCGGAUAUCGc---GGGCCGG- -5' |
|||||||
33610 | 3' | -58.6 | NC_007605.1 | + | 107479 | 0.69 | 0.634134 |
Target: 5'- -aAGGcgGUGgagcaGGCGCCCGGCCa -3' miRNA: 3'- cgUCCuaCGCggauaUCGCGGGCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home