miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 143425 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 116561 0.68 0.742213
Target:  5'- -aAGGAggUGCagGCCU--GGCGCCUggaGGCCg -3'
miRNA:   3'- cgUCCU--ACG--CGGAuaUCGCGGG---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 37364 0.7 0.624142
Target:  5'- gGC-GGAaaaGCGUCUGgacuggauaGGCGCCCGGCa -3'
miRNA:   3'- -CGuCCUa--CGCGGAUa--------UCGCGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 28465 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 149670 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 158769 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 12771 0.68 0.72209
Target:  5'- -gGGGGcgguccuugauccUGCGCCg--GGCGgacgcggucagcCCCGGCCa -3'
miRNA:   3'- cgUCCU-------------ACGCGGauaUCGC------------GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 133440 0.72 0.478516
Target:  5'- cCGGGuugGUgGCaCUGUuGCGCCCGGCCc -3'
miRNA:   3'- cGUCCua-CG-CG-GAUAuCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 155700 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 34599 0.73 0.442362
Target:  5'- gGguGGAggcUGCGCCUG-AGCuGCCUGGUg -3'
miRNA:   3'- -CguCCU---ACGCGGAUaUCG-CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 48678 0.68 0.732676
Target:  5'- aGCAGGc----CCUGauGCGCCUGGCCg -3'
miRNA:   3'- -CGUCCuacgcGGAUauCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 146494 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 111317 0.68 0.6928
Target:  5'- cCAGGAUGUgugccgggacgccGCCgccagGUGG-GCCCuGGCCa -3'
miRNA:   3'- cGUCCUACG-------------CGGa----UAUCgCGGG-CCGG- -5'
33610 3' -58.6 NC_007605.1 + 13473 0.69 0.634134
Target:  5'- aCGGGGUGCGCCgcUA-CGCCa-GCCa -3'
miRNA:   3'- cGUCCUACGCGGauAUcGCGGgcCGG- -5'
33610 3' -58.6 NC_007605.1 + 117923 0.71 0.564553
Target:  5'- aGCuGGggGCGCg---GGUGCCUGGCUg -3'
miRNA:   3'- -CGuCCuaCGCGgauaUCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 131280 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 34760 0.67 0.779357
Target:  5'- cGUAGGAcaGCGUCUcccGGCGCagGGCCu -3'
miRNA:   3'- -CGUCCUa-CGCGGAua-UCGCGggCCGG- -5'
33610 3' -58.6 NC_007605.1 + 152738 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 140463 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 118252 0.67 0.751658
Target:  5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3'
miRNA:   3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.