miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 131280 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 37447 0.7 0.614156
Target:  5'- aGCAGGGacgauaggUGUagacGCCggGUGGcCGCCuCGGCCa -3'
miRNA:   3'- -CGUCCU--------ACG----CGGa-UAUC-GCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 110345 0.69 0.654105
Target:  5'- uGCuauGGGUccgcuacaGcCGCCUGUGGCaggcCCCGGCCc -3'
miRNA:   3'- -CGu--CCUA--------C-GCGGAUAUCGc---GGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 28465 0.72 0.487782
Target:  5'- cGCGGGGUcccUGCCUGgcaccAGgGUCCGGCCu -3'
miRNA:   3'- -CGUCCUAc--GCGGAUa----UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 120979 0.66 0.831143
Target:  5'- uCGGGcUGCGaCCccguGCGCCCgugguGGCCg -3'
miRNA:   3'- cGUCCuACGC-GGauauCGCGGG-----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 96286 0.66 0.8229
Target:  5'- -gAGGAgGUGCCga----GCCUGGCCa -3'
miRNA:   3'- cgUCCUaCGCGGauaucgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 119421 0.66 0.805925
Target:  5'- aGCucuGGcacucauUGCGCCcgcuggAGgGCCCGGUCg -3'
miRNA:   3'- -CGu--CCu------ACGCGGaua---UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 38310 0.67 0.797208
Target:  5'- gGCGGGGcugGCGCag--AGCGCCCucCCg -3'
miRNA:   3'- -CGUCCUa--CGCGgauaUCGCGGGccGG- -5'
33610 3' -58.6 NC_007605.1 + 158876 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 140463 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 118252 0.67 0.751658
Target:  5'- cCAGGGgccugGCGCU--UGGgGCCuCGGCUg -3'
miRNA:   3'- cGUCCUa----CGCGGauAUCgCGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 149563 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 140356 0.68 0.742213
Target:  5'- cCAGGAggGCGCCUGgaGGCggGCCCgaggGGCUc -3'
miRNA:   3'- cGUCCUa-CGCGGAUa-UCG--CGGG----CCGG- -5'
33610 3' -58.6 NC_007605.1 + 168912 0.68 0.713362
Target:  5'- cGCccuGGucUGaaagGCCUGuUGGCGCCgGGCCg -3'
miRNA:   3'- -CGu--CCu-ACg---CGGAU-AUCGCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 149670 0.67 0.761003
Target:  5'- -gAGGAgGCGCCa--GGCGCggggCCGGUCg -3'
miRNA:   3'- cgUCCUaCGCGGauaUCGCG----GGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 167261 0.66 0.847105
Target:  5'- cGCAGGG-GCGUUgGUGGCggaGUCUGGCa -3'
miRNA:   3'- -CGUCCUaCGCGGaUAUCG---CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 65501 0.66 0.847105
Target:  5'- cCAGGGauauggccuccaUGgGCCUcgggGUgcAGgGCCUGGCCg -3'
miRNA:   3'- cGUCCU------------ACgCGGA----UA--UCgCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 67971 0.7 0.614156
Target:  5'- cGCccuGAUGC-CCUAUAuGCcCCCGGCCa -3'
miRNA:   3'- -CGuc-CUACGcGGAUAU-CGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 52869 0.66 0.8229
Target:  5'- aGUAGGAgucgGCGgCggcGGCGCUgGGCg -3'
miRNA:   3'- -CGUCCUa---CGCgGauaUCGCGGgCCGg -5'
33610 3' -58.6 NC_007605.1 + 160600 0.66 0.814491
Target:  5'- aGgAGGAUG-GCCUcca--GCUCGGCCa -3'
miRNA:   3'- -CgUCCUACgCGGAuaucgCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.