miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 3' -58.6 NC_007605.1 + 101830 0.7 0.574408
Target:  5'- --uGGAcgagaGCGCCUcUGGCGCCCucggcuccucGGCCa -3'
miRNA:   3'- cguCCUa----CGCGGAuAUCGCGGG----------CCGG- -5'
33610 3' -58.6 NC_007605.1 + 52948 0.7 0.594229
Target:  5'- uGCGGGGgaccaauaGCUUGggGGCGUCCGGCUg -3'
miRNA:   3'- -CGUCCUacg-----CGGAUa-UCGCGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 170706 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 167261 0.66 0.847105
Target:  5'- cGCAGGG-GCGUUgGUGGCggaGUCUGGCa -3'
miRNA:   3'- -CGUCCUaCGCGGaUAUCG---CGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 169647 0.66 0.805925
Target:  5'- uCGGGggGCGCCgccgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua-UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 2698 0.67 0.797208
Target:  5'- cCAGGGcgGCgGCCc--GGCGCCaacaGGCCu -3'
miRNA:   3'- cGUCCUa-CG-CGGauaUCGCGGg---CCGG- -5'
33610 3' -58.6 NC_007605.1 + 102243 0.67 0.78835
Target:  5'- --uGGAucUGCGCCaccggcAUGGUGCCC-GCCg -3'
miRNA:   3'- cguCCU--ACGCGGa-----UAUCGCGGGcCGG- -5'
33610 3' -58.6 NC_007605.1 + 58934 0.67 0.770238
Target:  5'- gGCGGGAg--GUCagggGGCGgCCGGCCa -3'
miRNA:   3'- -CGUCCUacgCGGaua-UCGCgGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 113801 0.67 0.770238
Target:  5'- cGCAGGAUGUuCaCgugGGC-CCCGGCa -3'
miRNA:   3'- -CGUCCUACGcG-GauaUCGcGGGCCGg -5'
33610 3' -58.6 NC_007605.1 + 91741 0.67 0.770238
Target:  5'- cGCAGGcgcgGgGCCUc-GGC-CCUGGCCu -3'
miRNA:   3'- -CGUCCua--CgCGGAuaUCGcGGGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39422 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39547 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 39672 0.66 0.831143
Target:  5'- cCGGGcgGcCGCCgGUGGgucCGCUgGGCCg -3'
miRNA:   3'- cGUCCuaC-GCGGaUAUC---GCGGgCCGG- -5'
33610 3' -58.6 NC_007605.1 + 40214 0.66 0.838415
Target:  5'- gGCAGGggGUccccauggcacagGCCUAgggguccagggGGCaGCCgCGGCCc -3'
miRNA:   3'- -CGUCCuaCG-------------CGGAUa----------UCG-CGG-GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 170184 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 171244 0.66 0.839214
Target:  5'- uCGGGggGCGCCgcgcgGGCGCa--GCCa -3'
miRNA:   3'- cGUCCuaCGCGGaua--UCGCGggcCGG- -5'
33610 3' -58.6 NC_007605.1 + 136862 0.66 0.839214
Target:  5'- aCAGGcccUGCGCCgggAGaCGCUguccuaCGGCCa -3'
miRNA:   3'- cGUCCu--ACGCGGauaUC-GCGG------GCCGG- -5'
33610 3' -58.6 NC_007605.1 + 50527 0.66 0.847105
Target:  5'- -gGGGuGUGCGCCgg-GGCGgCCaaGCCg -3'
miRNA:   3'- cgUCC-UACGCGGauaUCGC-GGgcCGG- -5'
33610 3' -58.6 NC_007605.1 + 63324 0.66 0.847105
Target:  5'- gGCAGGuggGgGCCUGacGCGgaUGGCCa -3'
miRNA:   3'- -CGUCCua-CgCGGAUauCGCggGCCGG- -5'
33610 3' -58.6 NC_007605.1 + 65501 0.66 0.847105
Target:  5'- cCAGGGauauggccuccaUGgGCCUcgggGUgcAGgGCCUGGCCg -3'
miRNA:   3'- cGUCCU------------ACgCGGA----UA--UCgCGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.