miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 5' -53 NC_007605.1 + 86480 0.66 0.983536
Target:  5'- gUGACaugggAGuGGGCGCucucGGuGGUGUCUGCa -3'
miRNA:   3'- aGCUGg----UCuCCUGCG----UC-CUAUAGACG- -5'
33610 5' -53 NC_007605.1 + 106004 0.66 0.983536
Target:  5'- gUGACCGGu---CGCAGGAUGUCc-- -3'
miRNA:   3'- aGCUGGUCuccuGCGUCCUAUAGacg -5'
33610 5' -53 NC_007605.1 + 158609 0.66 0.983536
Target:  5'- gUGGCgGGGGG-UGCGGGcugcucugggGUCUGCg -3'
miRNA:   3'- aGCUGgUCUCCuGCGUCCua--------UAGACG- -5'
33610 5' -53 NC_007605.1 + 45166 0.66 0.983536
Target:  5'- -gGGCC--AGGAgGCAGGGgccCUGCg -3'
miRNA:   3'- agCUGGucUCCUgCGUCCUauaGACG- -5'
33610 5' -53 NC_007605.1 + 91158 0.66 0.982763
Target:  5'- aUGGCCAcGAGGGgGCGGGuggcucagguccAUCUGUc -3'
miRNA:   3'- aGCUGGU-CUCCUgCGUCCua----------UAGACG- -5'
33610 5' -53 NC_007605.1 + 166456 0.66 0.981553
Target:  5'- aCG-CCAG-GGGCgGguGGAuUAUCUGUu -3'
miRNA:   3'- aGCuGGUCuCCUG-CguCCU-AUAGACG- -5'
33610 5' -53 NC_007605.1 + 54396 0.66 0.981553
Target:  5'- aUGuCCGG-GGACuGCAGGGccuggcgcGUCUGCg -3'
miRNA:   3'- aGCuGGUCuCCUG-CGUCCUa-------UAGACG- -5'
33610 5' -53 NC_007605.1 + 97520 0.66 0.981553
Target:  5'- --uGCCAGAGGcCGCGuGGcGUggCUGCg -3'
miRNA:   3'- agcUGGUCUCCuGCGU-CC-UAuaGACG- -5'
33610 5' -53 NC_007605.1 + 103165 0.66 0.979397
Target:  5'- gUCcGCCAGccuGGGUGcCAGGGUGUCUGg -3'
miRNA:   3'- -AGcUGGUCu--CCUGC-GUCCUAUAGACg -5'
33610 5' -53 NC_007605.1 + 55681 0.66 0.97453
Target:  5'- gUCGGCCAGcGGugGCguggcuucGGGGuUGUCgugguugGCg -3'
miRNA:   3'- -AGCUGGUCuCCugCG--------UCCU-AUAGa------CG- -5'
33610 5' -53 NC_007605.1 + 119745 0.66 0.97453
Target:  5'- -aGACCcuGGGACagGUAGGGUcgUUGCu -3'
miRNA:   3'- agCUGGucUCCUG--CGUCCUAuaGACG- -5'
33610 5' -53 NC_007605.1 + 69042 0.67 0.971805
Target:  5'- cUCGACCAGc--ACGUGGGuu-UCUGCc -3'
miRNA:   3'- -AGCUGGUCuccUGCGUCCuauAGACG- -5'
33610 5' -53 NC_007605.1 + 153796 0.67 0.968876
Target:  5'- gCGGCCAG-GGcaucggcaaaGCGCAGGGUcUC-GCu -3'
miRNA:   3'- aGCUGGUCuCC----------UGCGUCCUAuAGaCG- -5'
33610 5' -53 NC_007605.1 + 61290 0.67 0.967019
Target:  5'- gUGGCCccguGGGGGCGCAgacggcccuucgccuGGA--UCUGCa -3'
miRNA:   3'- aGCUGGu---CUCCUGCGU---------------CCUauAGACG- -5'
33610 5' -53 NC_007605.1 + 49348 0.67 0.965737
Target:  5'- aCGugCAGAGGACuuuUGGGGUGccUCgGCg -3'
miRNA:   3'- aGCugGUCUCCUGc--GUCCUAU--AGaCG- -5'
33610 5' -53 NC_007605.1 + 42165 0.67 0.962382
Target:  5'- uUCG-CCAGAGGACacuGUAGu---UCUGCg -3'
miRNA:   3'- -AGCuGGUCUCCUG---CGUCcuauAGACG- -5'
33610 5' -53 NC_007605.1 + 100712 0.67 0.962382
Target:  5'- gCGAuCCAGA--ACGCGGGGc-UCUGCa -3'
miRNA:   3'- aGCU-GGUCUccUGCGUCCUauAGACG- -5'
33610 5' -53 NC_007605.1 + 167062 0.67 0.959173
Target:  5'- cUCGACC-GAGGACuGCcggguacauguucauGGAgcgcaggGUCUGCa -3'
miRNA:   3'- -AGCUGGuCUCCUG-CGu--------------CCUa------UAGACG- -5'
33610 5' -53 NC_007605.1 + 8600 0.67 0.958805
Target:  5'- aCGGCCuGGGGACccuGCAGGAggggacCUGg -3'
miRNA:   3'- aGCUGGuCUCCUG---CGUCCUaua---GACg -5'
33610 5' -53 NC_007605.1 + 69325 0.68 0.955001
Target:  5'- cUCGAgCGGA-GACGCAGcAUuuUCUGCg -3'
miRNA:   3'- -AGCUgGUCUcCUGCGUCcUAu-AGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.