miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33610 5' -53 NC_007605.1 + 54558 0.68 0.950965
Target:  5'- cUGGCCAGAGGGC-CGGucucGAUAUCcGUg -3'
miRNA:   3'- aGCUGGUCUCCUGcGUC----CUAUAGaCG- -5'
33610 5' -53 NC_007605.1 + 170786 0.7 0.883817
Target:  5'- -gGAgCGGGGGgcgGCGCGGGAgc-CUGCa -3'
miRNA:   3'- agCUgGUCUCC---UGCGUCCUauaGACG- -5'
33610 5' -53 NC_007605.1 + 171324 0.7 0.883817
Target:  5'- -gGAgCGGGGGgcgGCGCGGGAgc-CUGCa -3'
miRNA:   3'- agCUgGUCUCC---UGCGUCCUauaGACG- -5'
33610 5' -53 NC_007605.1 + 155619 0.7 0.903846
Target:  5'- cUGGCCuuGAGGGCGCugAGGA---CUGCa -3'
miRNA:   3'- aGCUGGu-CUCCUGCG--UCCUauaGACG- -5'
33610 5' -53 NC_007605.1 + 118311 0.69 0.916014
Target:  5'- cCGGCCuc-GGugGCAGuGAUGuUCUGUg -3'
miRNA:   3'- aGCUGGucuCCugCGUC-CUAU-AGACG- -5'
33610 5' -53 NC_007605.1 + 169676 0.69 0.932447
Target:  5'- gUGACCGugauGAGGGgGCAGGGUcgcaggggguguGUCUGg -3'
miRNA:   3'- aGCUGGU----CUCCUgCGUCCUA------------UAGACg -5'
33610 5' -53 NC_007605.1 + 170214 0.69 0.932447
Target:  5'- gUGACCGugauGAGGGgGCAGGGUcgcaggggguguGUCUGg -3'
miRNA:   3'- aGCUGGU----CUCCUgCGUCCUA------------UAGACg -5'
33610 5' -53 NC_007605.1 + 170736 0.69 0.932447
Target:  5'- gUGACCGugauGAGGGgGCAGGGUcgcaggggguguGUCUGg -3'
miRNA:   3'- aGCUGGU----CUCCUgCGUCCUA------------UAGACg -5'
33610 5' -53 NC_007605.1 + 171274 0.69 0.932447
Target:  5'- gUGACCGugauGAGGGgGCAGGGUcgcaggggguguGUCUGg -3'
miRNA:   3'- aGCUGGU----CUCCUgCGUCCUA------------UAGACg -5'
33610 5' -53 NC_007605.1 + 170264 0.7 0.883817
Target:  5'- -gGAgCGGGGGgcgGCGCGGGAgc-CUGCa -3'
miRNA:   3'- agCUgGUCUCC---UGCGUCCUauaGACG- -5'
33610 5' -53 NC_007605.1 + 169726 0.7 0.883817
Target:  5'- -gGAgCGGGGGgcgGCGCGGGAgc-CUGCa -3'
miRNA:   3'- agCUgGUCUCC---UGCGUCCUauaGACG- -5'
33610 5' -53 NC_007605.1 + 135174 0.71 0.853959
Target:  5'- gUGAgCGGuuaccGGGGCGCAGGGccUCUGCc -3'
miRNA:   3'- aGCUgGUC-----UCCUGCGUCCUauAGACG- -5'
33610 5' -53 NC_007605.1 + 62818 0.79 0.428304
Target:  5'- cUCuGCCAGGGGugGCuGGGcGUCUGCc -3'
miRNA:   3'- -AGcUGGUCUCCugCGuCCUaUAGACG- -5'
33610 5' -53 NC_007605.1 + 59925 0.76 0.573469
Target:  5'- gUCGuCCaugcugAGGGGAgGUGGGGUGUCUGCu -3'
miRNA:   3'- -AGCuGG------UCUCCUgCGUCCUAUAGACG- -5'
33610 5' -53 NC_007605.1 + 95477 0.75 0.624885
Target:  5'- -gGGCUguuGGAGGGgGCAGGA-GUCUGCa -3'
miRNA:   3'- agCUGG---UCUCCUgCGUCCUaUAGACG- -5'
33610 5' -53 NC_007605.1 + 52335 0.74 0.696851
Target:  5'- gCGGCCAGAGGGCGgCucGGGUAUCc-- -3'
miRNA:   3'- aGCUGGUCUCCUGC-Gu-CCUAUAGacg -5'
33610 5' -53 NC_007605.1 + 51383 0.72 0.784921
Target:  5'- cCGGUCGGAGGAgGcCGGGGUguuAUCUGCu -3'
miRNA:   3'- aGCUGGUCUCCUgC-GUCCUA---UAGACG- -5'
33610 5' -53 NC_007605.1 + 155853 0.72 0.812097
Target:  5'- -aGuCCAGAGGGCuuccguGGGUGUCUGCc -3'
miRNA:   3'- agCuGGUCUCCUGcgu---CCUAUAGACG- -5'
33610 5' -53 NC_007605.1 + 154501 0.72 0.812097
Target:  5'- gCGGCCGccAGGAgGCAGGAgaacacgcggAUCUGCu -3'
miRNA:   3'- aGCUGGUc-UCCUgCGUCCUa---------UAGACG- -5'
33610 5' -53 NC_007605.1 + 108561 0.71 0.853959
Target:  5'- -aGACCAGAGGgcacccaugGCGCGGuGucaaaaguauUGUCUGCg -3'
miRNA:   3'- agCUGGUCUCC---------UGCGUC-Cu---------AUAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.