miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 138707 0.66 0.983879
Target:  5'- uGGcGGAGUCagcgacgugaugaaGGUGGccccGGGCGCAGGGc -3'
miRNA:   3'- gUC-CCUCAGaa------------CCAUC----UUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 51033 0.66 0.983691
Target:  5'- gAGGGGGgCUguugUGGUgcugguuggggaAGGAGCucCAGGGa -3'
miRNA:   3'- gUCCCUCaGA----ACCA------------UCUUCGu-GUCCC- -5'
33611 3' -53 NC_007605.1 + 96525 0.66 0.983691
Target:  5'- aGGGGcAGgagCaggaGGUGGAGGC-CGGGGu -3'
miRNA:   3'- gUCCC-UCa--Gaa--CCAUCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 96528 0.66 0.983691
Target:  5'- aGGcGGAGUUgaugaaagGGgccGAGGCugAGGGg -3'
miRNA:   3'- gUC-CCUCAGaa------CCau-CUUCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 112151 0.66 0.983691
Target:  5'- gAGGGAGag--GGaggGGAGGCAgaucuCAGGGg -3'
miRNA:   3'- gUCCCUCagaaCCa--UCUUCGU-----GUCCC- -5'
33611 3' -53 NC_007605.1 + 136195 0.66 0.983501
Target:  5'- cCGGGGAcGUggccguaguggCUUGGUuguaaguGGAGGUaugaGCAGGGg -3'
miRNA:   3'- -GUCCCU-CA-----------GAACCA-------UCUUCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 53860 0.66 0.981713
Target:  5'- aGGGGAGcC-UGGacAGggGCuuuggGCGGGGa -3'
miRNA:   3'- gUCCCUCaGaACCa-UCuuCG-----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 10715 0.66 0.981713
Target:  5'- gAGGGAGUgUggGGUGGGcccggGGCAgccCAGGa -3'
miRNA:   3'- gUCCCUCAgAa-CCAUCU-----UCGU---GUCCc -5'
33611 3' -53 NC_007605.1 + 5113 0.66 0.981713
Target:  5'- -cGGuGGcCUUGG-GGGAGCugGGGGu -3'
miRNA:   3'- guCCcUCaGAACCaUCUUCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 171340 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 170802 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 170280 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 169742 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 1572 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 63327 0.66 0.97956
Target:  5'- gGGGGAGgcauaacggUGGUgGGAGGCcCAGGa -3'
miRNA:   3'- gUCCCUCaga------ACCA-UCUUCGuGUCCc -5'
33611 3' -53 NC_007605.1 + 512 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 2109 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 1049 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 71091 0.66 0.978181
Target:  5'- gUAGGaacGGGUCUUGGaUgggcucuagggucagAGAGGC-CAGGGg -3'
miRNA:   3'- -GUCC---CUCAGAACC-A---------------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 135177 0.66 0.977225
Target:  5'- uGGuGGGGg--UGGUGGggGCGgGGGu -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUgUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.