Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 15590 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 12521 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 154397 | 0.68 | 0.946825 |
Target: 5'- cCGGGGAGUU---GUAGAAuccGgACAGGGg -3' miRNA: 3'- -GUCCCUCAGaacCAUCUU---CgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 157875 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 142531 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139462 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136393 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 21728 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 34003 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 24797 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 66800 | 0.68 | 0.932017 |
Target: 5'- uCAGGGGGaUCUUuacgugGGUGGAuguagggAGCACucGGGg -3' miRNA: 3'- -GUCCCUC-AGAA------CCAUCU-------UCGUGu-CCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 167125 | 0.68 | 0.951106 |
Target: 5'- --uGGAGUUacugGGUGGGAG-ACAGGGa -3' miRNA: 3'- gucCCUCAGaa--CCAUCUUCgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 132048 | 0.68 | 0.951106 |
Target: 5'- aCGGGGcuUCggGGUAGggGCAgUAGGc -3' miRNA: 3'- -GUCCCucAGaaCCAUCuuCGU-GUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136788 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 135213 | 0.69 | 0.910045 |
Target: 5'- uGGuGGAGg--UGGUGGggGUGguGGGg -3' miRNA: 3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 56451 | 0.69 | 0.927278 |
Target: 5'- -uGGGGGUCg-GGUcGGggGCACucucgAGGGu -3' miRNA: 3'- guCCCUCAGaaCCA-UCuuCGUG-----UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 144922 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 141853 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 152133 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 155202 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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