Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 138078 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 159561 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 140261 | 0.71 | 0.817758 |
Target: 5'- -uGGGGGUCUcgGGUAGGccaugauucuuccaGGCAUAGGu -3' miRNA: 3'- guCCCUCAGAa-CCAUCU--------------UCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 40215 | 0.71 | 0.83741 |
Target: 5'- gCAGGGGGUCcccaUGGcacaggccUAGggGUcCAGGGg -3' miRNA: 3'- -GUCCCUCAGa---ACC--------AUCuuCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170177 | 0.71 | 0.845643 |
Target: 5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3' miRNA: 3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170699 | 0.71 | 0.845643 |
Target: 5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3' miRNA: 3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 147285 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171237 | 0.71 | 0.845643 |
Target: 5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3' miRNA: 3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 61227 | 0.71 | 0.853677 |
Target: 5'- cCGGGGAGUa--GG-GGggGCuuACAGGGg -3' miRNA: 3'- -GUCCCUCAgaaCCaUCuuCG--UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171169 | 0.7 | 0.890632 |
Target: 5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3' miRNA: 3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 169572 | 0.7 | 0.890632 |
Target: 5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3' miRNA: 3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 48449 | 0.7 | 0.883689 |
Target: 5'- aGGGGAGgagCUc-GUGGggGC-CGGGGg -3' miRNA: 3'- gUCCCUCa--GAacCAUCuuCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 148492 | 0.7 | 0.890632 |
Target: 5'- uGGGGGGUg-UGGUAu-GGCACAGGc -3' miRNA: 3'- gUCCCUCAgaACCAUcuUCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 15635 | 0.7 | 0.897341 |
Target: 5'- gCAGGGG----UGGUGGAuGUGCGGGGg -3' miRNA: 3'- -GUCCCUcagaACCAUCUuCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 128057 | 0.7 | 0.86912 |
Target: 5'- -uGGGuuaacgGGUGGAAGCAUGGGGg -3' miRNA: 3'- guCCCucagaaCCAUCUUCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170109 | 0.7 | 0.890632 |
Target: 5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3' miRNA: 3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139857 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136788 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 135213 | 0.69 | 0.910045 |
Target: 5'- uGGuGGAGg--UGGUGGggGUGguGGGg -3' miRNA: 3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 37212 | 0.69 | 0.903813 |
Target: 5'- gGGGGAGg---GGcAGggGCagggGCAGGGg -3' miRNA: 3'- gUCCCUCagaaCCaUCuuCG----UGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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