Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 151737 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 66800 | 0.68 | 0.932017 |
Target: 5'- uCAGGGGGaUCUUuacgugGGUGGAuguagggAGCACucGGGg -3' miRNA: 3'- -GUCCCUC-AGAA------CCAUCU-------UCGUGu-CCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136393 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139462 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 142531 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 145600 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 24797 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 34003 | 0.68 | 0.951106 |
Target: 5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3' miRNA: 3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 132048 | 0.68 | 0.951106 |
Target: 5'- aCGGGGcuUCggGGUAGggGCAgUAGGc -3' miRNA: 3'- -GUCCCucAGaaCCAUCuuCGU-GUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 167125 | 0.68 | 0.951106 |
Target: 5'- --uGGAGUUacugGGUGGGAG-ACAGGGa -3' miRNA: 3'- gucCCUCAGaa--CCAUCUUCgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 154806 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 157875 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 146713 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 143645 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 140576 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 43795 | 0.67 | 0.965904 |
Target: 5'- uCAGGauGGaCUUGGUGGGAGacaguuGCAGGGa -3' miRNA: 3'- -GUCCc-UCaGAACCAUCUUCg-----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 135240 | 0.67 | 0.95515 |
Target: 5'- uGGuGGGGg--UGGUGGggGUGguGGGg -3' miRNA: 3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170632 | 0.67 | 0.965904 |
Target: 5'- gCGGGGGGUCggGGUccgcGGGCucCGGGGc -3' miRNA: 3'- -GUCCCUCAGaaCCAuc--UUCGu-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 57568 | 0.67 | 0.961846 |
Target: 5'- gAGGagaaaGAGUCguggUGGUGGggGCugcugcugcaguCGGGGa -3' miRNA: 3'- gUCC-----CUCAGa---ACCAUCuuCGu-----------GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 137507 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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