miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 155958 1.11 0.004458
Target:  5'- uCAGGGAGUCUUGGUAGAAGCACAGGGg -3'
miRNA:   3'- -GUCCCUCAGAACCAUCUUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 171597 0.83 0.252046
Target:  5'- gGGGGGGUgUUGGcGGggGCAUGGGGg -3'
miRNA:   3'- gUCCCUCAgAACCaUCuuCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 169701 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 170239 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 170761 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 171299 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 135273 0.76 0.592384
Target:  5'- uGGGGGGgg-UGGUGGGAGUGguGGGg -3'
miRNA:   3'- gUCCCUCagaACCAUCUUCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 91513 0.76 0.602716
Target:  5'- cCAGGGAGauccggCUggGGUGGGAGCAUGGGu -3'
miRNA:   3'- -GUCCCUCa-----GAa-CCAUCUUCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 47204 0.73 0.720065
Target:  5'- uCGGGGuGUCUUGGggacucacacguuaGGggGCGCGGuGGu -3'
miRNA:   3'- -GUCCCuCAGAACCa-------------UCuuCGUGUC-CC- -5'
33611 3' -53 NC_007605.1 + 131628 0.73 0.736044
Target:  5'- gGGGGAGggaaccgGGUGGGAGCAgggaGGGGg -3'
miRNA:   3'- gUCCCUCagaa---CCAUCUUCGUg---UCCC- -5'
33611 3' -53 NC_007605.1 + 71305 0.72 0.792607
Target:  5'- uCGGGGAGcUCUUGG-AGAccucggugcucuaGGCACccuGGGGg -3'
miRNA:   3'- -GUCCCUC-AGAACCaUCU-------------UCGUG---UCCC- -5'
33611 3' -53 NC_007605.1 + 139205 0.72 0.808922
Target:  5'- uGGGGGGUCUUaGUGGAAGUgacgugcugugaauACAGGu -3'
miRNA:   3'- gUCCCUCAGAAcCAUCUUCG--------------UGUCCc -5'
33611 3' -53 NC_007605.1 + 169986 0.72 0.81159
Target:  5'- cCGGGGGGcaUCggggGGUGG-GGCAUGGGGg -3'
miRNA:   3'- -GUCCCUC--AGaa--CCAUCuUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 171046 0.72 0.81159
Target:  5'- cCGGGGGGcaUCggggGGUGG-GGCAUGGGGg -3'
miRNA:   3'- -GUCCCUC--AGaa--CCAUCuUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 44894 0.72 0.81159
Target:  5'- aCAGGGGGUCgcagaacggUGcuuGUGGAAGUcuuGCGGGGu -3'
miRNA:   3'- -GUCCCUCAGa--------AC---CAUCUUCG---UGUCCC- -5'
33611 3' -53 NC_007605.1 + 140261 0.71 0.817758
Target:  5'- -uGGGGGUCUcgGGUAGGccaugauucuuccaGGCAUAGGu -3'
miRNA:   3'- guCCCUCAGAa-CCAUCU--------------UCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 40215 0.71 0.83741
Target:  5'- gCAGGGGGUCcccaUGGcacaggccUAGggGUcCAGGGg -3'
miRNA:   3'- -GUCCCUCAGa---ACC--------AUCuuCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 144216 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 138078 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 141147 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.