miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 141147 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 138078 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 144216 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 40215 0.71 0.83741
Target:  5'- gCAGGGGGUCcccaUGGcacaggccUAGggGUcCAGGGg -3'
miRNA:   3'- -GUCCCUCAGa---ACC--------AUCuuCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 159561 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 170699 0.71 0.845643
Target:  5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3'
miRNA:   3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 171237 0.71 0.845643
Target:  5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3'
miRNA:   3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 170177 0.71 0.845643
Target:  5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3'
miRNA:   3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 61227 0.71 0.853677
Target:  5'- cCGGGGAGUa--GG-GGggGCuuACAGGGg -3'
miRNA:   3'- -GUCCCUCAgaaCCaUCuuCG--UGUCCC- -5'
33611 3' -53 NC_007605.1 + 128057 0.7 0.86912
Target:  5'- -uGGGuuaacgGGUGGAAGCAUGGGGg -3'
miRNA:   3'- guCCCucagaaCCAUCUUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 48449 0.7 0.883689
Target:  5'- aGGGGAGgagCUc-GUGGggGC-CGGGGg -3'
miRNA:   3'- gUCCCUCa--GAacCAUCuuCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 148492 0.7 0.890632
Target:  5'- uGGGGGGUg-UGGUAu-GGCACAGGc -3'
miRNA:   3'- gUCCCUCAgaACCAUcuUCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 171169 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 170109 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 169572 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 15635 0.7 0.897341
Target:  5'- gCAGGGG----UGGUGGAuGUGCGGGGg -3'
miRNA:   3'- -GUCCCUcagaACCAUCUuCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 37212 0.69 0.903813
Target:  5'- gGGGGAGg---GGcAGggGCagggGCAGGGg -3'
miRNA:   3'- gUCCCUCagaaCCaUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 135213 0.69 0.910045
Target:  5'- uGGuGGAGg--UGGUGGggGUGguGGGg -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 136788 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 139857 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.