Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 146713 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170632 | 0.67 | 0.965904 |
Target: 5'- gCGGGGGGUCggGGUccgcGGGCucCGGGGc -3' miRNA: 3'- -GUCCCUCAGaaCCAuc--UUCGu-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 143645 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 43795 | 0.67 | 0.965904 |
Target: 5'- uCAGGauGGaCUUGGUGGGAGacaguuGCAGGGa -3' miRNA: 3'- -GUCCc-UCaGAACCAUCUUCg-----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 22914 | 0.67 | 0.969045 |
Target: 5'- gGGGGcgagcAGUCgcaUGGcGGGAGUAUGGGGc -3' miRNA: 3'- gUCCC-----UCAGa--ACCaUCUUCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 48249 | 0.67 | 0.969045 |
Target: 5'- gCAGGGAuGcCggGG-AGAgggccaGGCACAGGGc -3' miRNA: 3'- -GUCCCU-CaGaaCCaUCU------UCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 62302 | 0.66 | 0.975732 |
Target: 5'- uGGGGuGUCUcUGGaucuuugcgucaaugUGGAGuCACAGGGa -3' miRNA: 3'- gUCCCuCAGA-ACC---------------AUCUUcGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 135177 | 0.66 | 0.977225 |
Target: 5'- uGGuGGGGg--UGGUGGggGCGgGGGu -3' miRNA: 3'- gUC-CCUCagaACCAUCuuCGUgUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 71091 | 0.66 | 0.978181 |
Target: 5'- gUAGGaacGGGUCUUGGaUgggcucuagggucagAGAGGC-CAGGGg -3' miRNA: 3'- -GUCC---CUCAGAACC-A---------------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 1572 | 0.66 | 0.97956 |
Target: 5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3' miRNA: 3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 1049 | 0.66 | 0.97956 |
Target: 5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3' miRNA: 3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 512 | 0.66 | 0.97956 |
Target: 5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3' miRNA: 3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 63327 | 0.66 | 0.97956 |
Target: 5'- gGGGGAGgcauaacggUGGUgGGAGGCcCAGGa -3' miRNA: 3'- gUCCCUCaga------ACCA-UCUUCGuGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 2109 | 0.66 | 0.97956 |
Target: 5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3' miRNA: 3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 169742 | 0.66 | 0.980443 |
Target: 5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3' miRNA: 3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171340 | 0.66 | 0.980443 |
Target: 5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3' miRNA: 3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170802 | 0.66 | 0.980443 |
Target: 5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3' miRNA: 3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170280 | 0.66 | 0.980443 |
Target: 5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3' miRNA: 3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 5113 | 0.66 | 0.981713 |
Target: 5'- -cGGuGGcCUUGG-GGGAGCugGGGGu -3' miRNA: 3'- guCCcUCaGAACCaUCUUCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 53860 | 0.66 | 0.981713 |
Target: 5'- aGGGGAGcC-UGGacAGggGCuuuggGCGGGGa -3' miRNA: 3'- gUCCCUCaGaACCa-UCuuCG-----UGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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