miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 62302 0.66 0.975732
Target:  5'- uGGGGuGUCUcUGGaucuuugcgucaaugUGGAGuCACAGGGa -3'
miRNA:   3'- gUCCCuCAGA-ACC---------------AUCUUcGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 22914 0.67 0.969045
Target:  5'- gGGGGcgagcAGUCgcaUGGcGGGAGUAUGGGGc -3'
miRNA:   3'- gUCCC-----UCAGa--ACCaUCUUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 48249 0.67 0.969045
Target:  5'- gCAGGGAuGcCggGG-AGAgggccaGGCACAGGGc -3'
miRNA:   3'- -GUCCCU-CaGaaCCaUCU------UCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 155920 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 43795 0.67 0.965904
Target:  5'- uCAGGauGGaCUUGGUGGGAGacaguuGCAGGGa -3'
miRNA:   3'- -GUCCc-UCaGAACCAUCUUCg-----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 140576 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 149782 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 170632 0.67 0.965904
Target:  5'- gCGGGGGGUCggGGUccgcGGGCucCGGGGc -3'
miRNA:   3'- -GUCCCUCAGaaCCAuc--UUCGu-GUCCC- -5'
33611 3' -53 NC_007605.1 + 137507 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 146713 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 158989 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 143645 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 152851 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 57568 0.67 0.961846
Target:  5'- gAGGagaaaGAGUCguggUGGUGGggGCugcugcugcaguCGGGGa -3'
miRNA:   3'- gUCC-----CUCAGa---ACCAUCuuCGu-----------GUCCC- -5'
33611 3' -53 NC_007605.1 + 135240 0.67 0.95515
Target:  5'- uGGuGGGGg--UGGUGGggGUGguGGGg -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 24797 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 21728 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 18659 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 15590 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 157875 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.