miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 136393 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 145600 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 139462 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 15590 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 21728 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 24797 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 34003 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 132048 0.68 0.951106
Target:  5'- aCGGGGcuUCggGGUAGggGCAgUAGGc -3'
miRNA:   3'- -GUCCCucAGaaCCAUCuuCGU-GUCCc -5'
33611 3' -53 NC_007605.1 + 167125 0.68 0.951106
Target:  5'- --uGGAGUUacugGGUGGGAG-ACAGGGa -3'
miRNA:   3'- gucCCUCAGaa--CCAUCUUCgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 12521 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 27866 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 154397 0.68 0.946825
Target:  5'- cCGGGGAGUU---GUAGAAuccGgACAGGGg -3'
miRNA:   3'- -GUCCCUCAGaacCAUCUU---CgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 66800 0.68 0.932017
Target:  5'- uCAGGGGGaUCUUuacgugGGUGGAuguagggAGCACucGGGg -3'
miRNA:   3'- -GUCCCUC-AGAA------CCAUCU-------UCGUGu-CCC- -5'
33611 3' -53 NC_007605.1 + 154129 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 157198 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 144922 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 56451 0.69 0.927278
Target:  5'- -uGGGGGUCg-GGUcGGggGCACucucgAGGGu -3'
miRNA:   3'- guCCCUCAGaaCCA-UCuuCGUG-----UCCC- -5'
33611 3' -53 NC_007605.1 + 151060 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 147991 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 138784 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.