Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 33611 | 3' | -53 | NC_007605.1 | + | 135273 | 0.76 | 0.592384 |
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Target: 5'- uGGGGGGgg-UGGUGGGAGUGguGGGg -3' miRNA: 3'- gUCCCUCagaACCAUCUUCGUguCCC- -5' |
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| 33611 | 3' | -53 | NC_007605.1 | + | 171299 | 0.8 | 0.358127 |
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Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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| 33611 | 3' | -53 | NC_007605.1 | + | 170761 | 0.8 | 0.358127 |
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Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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| 33611 | 3' | -53 | NC_007605.1 | + | 170239 | 0.8 | 0.358127 |
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Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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| 33611 | 3' | -53 | NC_007605.1 | + | 169701 | 0.8 | 0.358127 |
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Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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| 33611 | 3' | -53 | NC_007605.1 | + | 171597 | 0.83 | 0.252046 |
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Target: 5'- gGGGGGGUgUUGGcGGggGCAUGGGGg -3' miRNA: 3'- gUCCCUCAgAACCaUCuuCGUGUCCC- -5' |
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| 33611 | 3' | -53 | NC_007605.1 | + | 155958 | 1.11 | 0.004458 |
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Target: 5'- uCAGGGAGUCUUGGUAGAAGCACAGGGg -3' miRNA: 3'- -GUCCCUCAGAACCAUCUUCGUGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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