Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 135213 | 0.69 | 0.910045 |
Target: 5'- uGGuGGAGg--UGGUGGggGUGguGGGg -3' miRNA: 3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 135240 | 0.67 | 0.95515 |
Target: 5'- uGGuGGGGg--UGGUGGggGUGguGGGg -3' miRNA: 3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 135273 | 0.76 | 0.592384 |
Target: 5'- uGGGGGGgg-UGGUGGGAGUGguGGGg -3' miRNA: 3'- gUCCCUCagaACCAUCUUCGUguCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136195 | 0.66 | 0.983501 |
Target: 5'- cCGGGGAcGUggccguaguggCUUGGUuguaaguGGAGGUaugaGCAGGGg -3' miRNA: 3'- -GUCCCU-CA-----------GAACCA-------UCUUCG----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136393 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 136788 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 137507 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 138078 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 138707 | 0.66 | 0.983879 |
Target: 5'- uGGcGGAGUCagcgacgugaugaaGGUGGccccGGGCGCAGGGc -3' miRNA: 3'- gUC-CCUCAGaa------------CCAUC----UUCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 138784 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139205 | 0.72 | 0.808922 |
Target: 5'- uGGGGGGUCUUaGUGGAAGUgacgugcugugaauACAGGu -3' miRNA: 3'- gUCCCUCAGAAcCAUCUUCG--------------UGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139462 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139857 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 140261 | 0.71 | 0.817758 |
Target: 5'- -uGGGGGUCUcgGGUAGGccaugauucuuccaGGCAUAGGu -3' miRNA: 3'- guCCCUCAGAa-CCAUCU--------------UCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 140576 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 141147 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 141853 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 142531 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 142926 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 143645 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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