miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 155920 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 155958 1.11 0.004458
Target:  5'- uCAGGGAGUCUUGGUAGAAGCACAGGGg -3'
miRNA:   3'- -GUCCCUCAGAACCAUCUUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 156492 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 157198 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 157875 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 158271 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 158989 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 159561 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 167125 0.68 0.951106
Target:  5'- --uGGAGUUacugGGUGGGAG-ACAGGGa -3'
miRNA:   3'- gucCCUCAGaa--CCAUCUUCgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 169572 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 169701 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 169742 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 169986 0.72 0.81159
Target:  5'- cCGGGGGGcaUCggggGGUGG-GGCAUGGGGg -3'
miRNA:   3'- -GUCCCUC--AGaa--CCAUCuUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 170109 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 170177 0.71 0.845643
Target:  5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3'
miRNA:   3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 170239 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 170280 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 170632 0.67 0.965904
Target:  5'- gCGGGGGGUCggGGUccgcGGGCucCGGGGc -3'
miRNA:   3'- -GUCCCUCAGaaCCAuc--UUCGu-GUCCC- -5'
33611 3' -53 NC_007605.1 + 170699 0.71 0.845643
Target:  5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3'
miRNA:   3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 170761 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.