Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 158989 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 158271 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 157875 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 157198 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 156492 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 155958 | 1.11 | 0.004458 |
Target: 5'- uCAGGGAGUCUUGGUAGAAGCACAGGGg -3' miRNA: 3'- -GUCCCUCAGAACCAUCUUCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 155920 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 155202 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 154806 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 154397 | 0.68 | 0.946825 |
Target: 5'- cCGGGGAGUU---GUAGAAuccGgACAGGGg -3' miRNA: 3'- -GUCCCUCAGaacCAUCUU---CgUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 154129 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 153423 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 152851 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 152133 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 151737 | 0.68 | 0.951106 |
Target: 5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3' miRNA: 3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 151060 | 0.69 | 0.927278 |
Target: 5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3' miRNA: 3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 150354 | 0.71 | 0.83741 |
Target: 5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3' miRNA: 3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 149782 | 0.67 | 0.965904 |
Target: 5'- uGGGGucuGUCUg---GGggGCugAGGGc -3' miRNA: 3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 149064 | 0.69 | 0.920649 |
Target: 5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3' miRNA: 3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 148492 | 0.7 | 0.890632 |
Target: 5'- uGGGGGGUg-UGGUAu-GGCACAGGc -3' miRNA: 3'- gUCCCUCAgaACCAUcuUCGUGUCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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