miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 137507 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 136788 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 136393 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 136195 0.66 0.983501
Target:  5'- cCGGGGAcGUggccguaguggCUUGGUuguaaguGGAGGUaugaGCAGGGg -3'
miRNA:   3'- -GUCCCU-CA-----------GAACCA-------UCUUCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 135273 0.76 0.592384
Target:  5'- uGGGGGGgg-UGGUGGGAGUGguGGGg -3'
miRNA:   3'- gUCCCUCagaACCAUCUUCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 135240 0.67 0.95515
Target:  5'- uGGuGGGGg--UGGUGGggGUGguGGGg -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 135213 0.69 0.910045
Target:  5'- uGGuGGAGg--UGGUGGggGUGguGGGg -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 135177 0.66 0.977225
Target:  5'- uGGuGGGGg--UGGUGGggGCGgGGGu -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUgUCCc -5'
33611 3' -53 NC_007605.1 + 132048 0.68 0.951106
Target:  5'- aCGGGGcuUCggGGUAGggGCAgUAGGc -3'
miRNA:   3'- -GUCCCucAGaaCCAUCuuCGU-GUCCc -5'
33611 3' -53 NC_007605.1 + 131628 0.73 0.736044
Target:  5'- gGGGGAGggaaccgGGUGGGAGCAgggaGGGGg -3'
miRNA:   3'- gUCCCUCagaa---CCAUCUUCGUg---UCCC- -5'
33611 3' -53 NC_007605.1 + 128057 0.7 0.86912
Target:  5'- -uGGGuuaacgGGUGGAAGCAUGGGGg -3'
miRNA:   3'- guCCCucagaaCCAUCUUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 112151 0.66 0.983691
Target:  5'- gAGGGAGag--GGaggGGAGGCAgaucuCAGGGg -3'
miRNA:   3'- gUCCCUCagaaCCa--UCUUCGU-----GUCCC- -5'
33611 3' -53 NC_007605.1 + 96528 0.66 0.983691
Target:  5'- aGGcGGAGUUgaugaaagGGgccGAGGCugAGGGg -3'
miRNA:   3'- gUC-CCUCAGaa------CCau-CUUCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 96525 0.66 0.983691
Target:  5'- aGGGGcAGgagCaggaGGUGGAGGC-CGGGGu -3'
miRNA:   3'- gUCCC-UCa--Gaa--CCAUCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 91513 0.76 0.602716
Target:  5'- cCAGGGAGauccggCUggGGUGGGAGCAUGGGu -3'
miRNA:   3'- -GUCCCUCa-----GAa-CCAUCUUCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 71305 0.72 0.792607
Target:  5'- uCGGGGAGcUCUUGG-AGAccucggugcucuaGGCACccuGGGGg -3'
miRNA:   3'- -GUCCCUC-AGAACCaUCU-------------UCGUG---UCCC- -5'
33611 3' -53 NC_007605.1 + 71091 0.66 0.978181
Target:  5'- gUAGGaacGGGUCUUGGaUgggcucuagggucagAGAGGC-CAGGGg -3'
miRNA:   3'- -GUCC---CUCAGAACC-A---------------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 66800 0.68 0.932017
Target:  5'- uCAGGGGGaUCUUuacgugGGUGGAuguagggAGCACucGGGg -3'
miRNA:   3'- -GUCCCUC-AGAA------CCAUCU-------UCGUGu-CCC- -5'
33611 3' -53 NC_007605.1 + 63327 0.66 0.97956
Target:  5'- gGGGGAGgcauaacggUGGUgGGAGGCcCAGGa -3'
miRNA:   3'- gUCCCUCaga------ACCA-UCUUCGuGUCCc -5'
33611 3' -53 NC_007605.1 + 62302 0.66 0.975732
Target:  5'- uGGGGuGUCUcUGGaucuuugcgucaaugUGGAGuCACAGGGa -3'
miRNA:   3'- gUCCCuCAGA-ACC---------------AUCUUcGUGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.