Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33611 | 3' | -53 | NC_007605.1 | + | 169572 | 0.7 | 0.890632 |
Target: 5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3' miRNA: 3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 140261 | 0.71 | 0.817758 |
Target: 5'- -uGGGGGUCUcgGGUAGGccaugauucuuccaGGCAUAGGu -3' miRNA: 3'- guCCCUCAGAa-CCAUCU--------------UCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 40215 | 0.71 | 0.83741 |
Target: 5'- gCAGGGGGUCcccaUGGcacaggccUAGggGUcCAGGGg -3' miRNA: 3'- -GUCCCUCAGa---ACC--------AUCuuCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170177 | 0.71 | 0.845643 |
Target: 5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3' miRNA: 3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170699 | 0.71 | 0.845643 |
Target: 5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3' miRNA: 3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171237 | 0.71 | 0.845643 |
Target: 5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3' miRNA: 3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 61227 | 0.71 | 0.853677 |
Target: 5'- cCGGGGAGUa--GG-GGggGCuuACAGGGg -3' miRNA: 3'- -GUCCCUCAgaaCCaUCuuCG--UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 48449 | 0.7 | 0.883689 |
Target: 5'- aGGGGAGgagCUc-GUGGggGC-CGGGGg -3' miRNA: 3'- gUCCCUCa--GAacCAUCuuCGuGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 148492 | 0.7 | 0.890632 |
Target: 5'- uGGGGGGUg-UGGUAu-GGCACAGGc -3' miRNA: 3'- gUCCCUCAgaACCAUcuUCGUGUCCc -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171046 | 0.72 | 0.81159 |
Target: 5'- cCGGGGGGcaUCggggGGUGG-GGCAUGGGGg -3' miRNA: 3'- -GUCCCUC--AGaa--CCAUCuUCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 169986 | 0.72 | 0.81159 |
Target: 5'- cCGGGGGGcaUCggggGGUGG-GGCAUGGGGg -3' miRNA: 3'- -GUCCCUC--AGaa--CCAUCuUCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 44894 | 0.72 | 0.81159 |
Target: 5'- aCAGGGGGUCgcagaacggUGcuuGUGGAAGUcuuGCGGGGu -3' miRNA: 3'- -GUCCCUCAGa--------AC---CAUCUUCG---UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171597 | 0.83 | 0.252046 |
Target: 5'- gGGGGGGUgUUGGcGGggGCAUGGGGg -3' miRNA: 3'- gUCCCUCAgAACCaUCuuCGUGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 169701 | 0.8 | 0.358127 |
Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170239 | 0.8 | 0.358127 |
Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 170761 | 0.8 | 0.358127 |
Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 171299 | 0.8 | 0.358127 |
Target: 5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3' miRNA: 3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 47204 | 0.73 | 0.720065 |
Target: 5'- uCGGGGuGUCUUGGggacucacacguuaGGggGCGCGGuGGu -3' miRNA: 3'- -GUCCCuCAGAACCa-------------UCuuCGUGUC-CC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 71305 | 0.72 | 0.792607 |
Target: 5'- uCGGGGAGcUCUUGG-AGAccucggugcucuaGGCACccuGGGGg -3' miRNA: 3'- -GUCCCUC-AGAACCaUCU-------------UCGUG---UCCC- -5' |
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33611 | 3' | -53 | NC_007605.1 | + | 139205 | 0.72 | 0.808922 |
Target: 5'- uGGGGGGUCUUaGUGGAAGUgacgugcugugaauACAGGu -3' miRNA: 3'- gUCCCUCAGAAcCAUCUUCG--------------UGUCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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