miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 135273 0.76 0.592384
Target:  5'- uGGGGGGgg-UGGUGGGAGUGguGGGg -3'
miRNA:   3'- gUCCCUCagaACCAUCUUCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 145995 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 152133 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 138707 0.66 0.983879
Target:  5'- uGGcGGAGUCagcgacgugaugaaGGUGGccccGGGCGCAGGGc -3'
miRNA:   3'- gUC-CCUCAGaa------------CCAUC----UUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 141147 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 144216 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 150354 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 153423 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 128057 0.7 0.86912
Target:  5'- -uGGGuuaacgGGUGGAAGCAUGGGGg -3'
miRNA:   3'- guCCCucagaaCCAUCUUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 142926 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 135213 0.69 0.910045
Target:  5'- uGGuGGAGg--UGGUGGggGUGguGGGg -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 159561 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 91513 0.76 0.602716
Target:  5'- cCAGGGAGauccggCUggGGUGGGAGCAUGGGu -3'
miRNA:   3'- -GUCCCUCa-----GAa-CCAUCUUCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 136788 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 131628 0.73 0.736044
Target:  5'- gGGGGAGggaaccgGGUGGGAGCAgggaGGGGg -3'
miRNA:   3'- gUCCCUCagaa---CCAUCUUCGUg---UCCC- -5'
33611 3' -53 NC_007605.1 + 156492 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 139857 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 149064 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 138078 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5'
33611 3' -53 NC_007605.1 + 147285 0.71 0.83741
Target:  5'- gGGGGAGgCUggGGUggcaggagGGGAGCAgCAGGGu -3'
miRNA:   3'- gUCCCUCaGAa-CCA--------UCUUCGU-GUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.