miRNA display CGI


Results 41 - 60 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 158989 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 142531 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 149064 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 155920 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 145995 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 136195 0.66 0.983501
Target:  5'- cCGGGGAcGUggccguaguggCUUGGUuguaaguGGAGGUaugaGCAGGGg -3'
miRNA:   3'- -GUCCCU-CA-----------GAACCA-------UCUUCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 155202 0.69 0.920649
Target:  5'- gAGGGGGcUCgggUGGgaggcgggaaggAGAGGC-CAGGGg -3'
miRNA:   3'- gUCCCUC-AGa--ACCa-----------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 10715 0.66 0.981713
Target:  5'- gAGGGAGUgUggGGUGGGcccggGGCAgccCAGGa -3'
miRNA:   3'- gUCCCUCAgAa-CCAUCU-----UCGU---GUCCc -5'
33611 3' -53 NC_007605.1 + 63327 0.66 0.97956
Target:  5'- gGGGGAGgcauaacggUGGUgGGAGGCcCAGGa -3'
miRNA:   3'- gUCCCUCaga------ACCA-UCUUCGuGUCCc -5'
33611 3' -53 NC_007605.1 + 1049 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 512 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 62302 0.66 0.975732
Target:  5'- uGGGGuGUCUcUGGaucuuugcgucaaugUGGAGuCACAGGGa -3'
miRNA:   3'- gUCCCuCAGA-ACC---------------AUCUUcGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 48249 0.67 0.969045
Target:  5'- gCAGGGAuGcCggGG-AGAgggccaGGCACAGGGc -3'
miRNA:   3'- -GUCCCU-CaGaaCCaUCU------UCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 152851 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 143645 0.67 0.965904
Target:  5'- uGGGGucuGUCUg---GGggGCugAGGGc -3'
miRNA:   3'- gUCCCu--CAGAaccaUCuuCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 135240 0.67 0.95515
Target:  5'- uGGuGGGGg--UGGUGGggGUGguGGGg -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUguCCC- -5'
33611 3' -53 NC_007605.1 + 151737 0.68 0.951106
Target:  5'- -cGGGGGUCgggcUGGgccgccagGGggGCAaaaGGGGc -3'
miRNA:   3'- guCCCUCAGa---ACCa-------UCuuCGUg--UCCC- -5'
33611 3' -53 NC_007605.1 + 66800 0.68 0.932017
Target:  5'- uCAGGGGGaUCUUuacgugGGUGGAuguagggAGCACucGGGg -3'
miRNA:   3'- -GUCCCUC-AGAA------CCAUCU-------UCGUGu-CCC- -5'
33611 3' -53 NC_007605.1 + 154129 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 141853 0.69 0.927278
Target:  5'- uGGGcccGAGUcCUUGGaGGggGCGgAGGGc -3'
miRNA:   3'- gUCC---CUCA-GAACCaUCuuCGUgUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.