miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 135177 0.66 0.977225
Target:  5'- uGGuGGGGg--UGGUGGggGCGgGGGu -3'
miRNA:   3'- gUC-CCUCagaACCAUCuuCGUgUCCc -5'
33611 3' -53 NC_007605.1 + 512 0.66 0.97956
Target:  5'- gCGGGGGGgCUg---GGggGCcGCGGGGg -3'
miRNA:   3'- -GUCCCUCaGAaccaUCuuCG-UGUCCC- -5'
33611 3' -53 NC_007605.1 + 171046 0.72 0.81159
Target:  5'- cCGGGGGGcaUCggggGGUGG-GGCAUGGGGg -3'
miRNA:   3'- -GUCCCUC--AGaa--CCAUCuUCGUGUCCC- -5'
33611 3' -53 NC_007605.1 + 18659 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 51033 0.66 0.983691
Target:  5'- gAGGGGGgCUguugUGGUgcugguuggggaAGGAGCucCAGGGa -3'
miRNA:   3'- gUCCCUCaGA----ACCA------------UCUUCGu-GUCCC- -5'
33611 3' -53 NC_007605.1 + 47204 0.73 0.720065
Target:  5'- uCGGGGuGUCUUGGggacucacacguuaGGggGCGCGGuGGu -3'
miRNA:   3'- -GUCCCuCAGAACCa-------------UCuuCGUGUC-CC- -5'
33611 3' -53 NC_007605.1 + 169701 0.8 0.358127
Target:  5'- gCAGGGGGUgUgucUGGUGGggGCgggaGCGGGGg -3'
miRNA:   3'- -GUCCCUCAgA---ACCAUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 140261 0.71 0.817758
Target:  5'- -uGGGGGUCUcgGGUAGGccaugauucuuccaGGCAUAGGu -3'
miRNA:   3'- guCCCUCAGAa-CCAUCU--------------UCGUGUCCc -5'
33611 3' -53 NC_007605.1 + 40215 0.71 0.83741
Target:  5'- gCAGGGGGUCcccaUGGcacaggccUAGggGUcCAGGGg -3'
miRNA:   3'- -GUCCCUCAGa---ACC--------AUCuuCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 15590 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 21728 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 154397 0.68 0.946825
Target:  5'- cCGGGGAGUU---GUAGAAuccGgACAGGGg -3'
miRNA:   3'- -GUCCCUCAGaacCAUCUU---CgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 37212 0.69 0.903813
Target:  5'- gGGGGAGg---GGcAGggGCagggGCAGGGg -3'
miRNA:   3'- gUCCCUCagaaCCaUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 171169 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 170109 0.7 0.890632
Target:  5'- gCGGGGGGUCggGGUccgcgggcuccGGggGCuGCGGGcGg -3'
miRNA:   3'- -GUCCCUCAGaaCCA-----------UCuuCG-UGUCC-C- -5'
33611 3' -53 NC_007605.1 + 24797 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 27866 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 96525 0.66 0.983691
Target:  5'- aGGGGcAGgagCaggaGGUGGAGGC-CGGGGu -3'
miRNA:   3'- gUCCC-UCa--Gaa--CCAUCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 12521 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 170177 0.71 0.845643
Target:  5'- gGGGGGGUCgggGGgcGccGCGCGGGc -3'
miRNA:   3'- gUCCCUCAGaa-CCauCuuCGUGUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.