miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 3' -53 NC_007605.1 + 170632 0.67 0.965904
Target:  5'- gCGGGGGGUCggGGUccgcGGGCucCGGGGc -3'
miRNA:   3'- -GUCCCUCAGaaCCAuc--UUCGu-GUCCC- -5'
33611 3' -53 NC_007605.1 + 71091 0.66 0.978181
Target:  5'- gUAGGaacGGGUCUUGGaUgggcucuagggucagAGAGGC-CAGGGg -3'
miRNA:   3'- -GUCC---CUCAGAACC-A---------------UCUUCGuGUCCC- -5'
33611 3' -53 NC_007605.1 + 170280 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 169742 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 170802 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 171340 0.66 0.980443
Target:  5'- -cGGGAGcCUgcacgccguuggagGGUAGAAugACAGGGg -3'
miRNA:   3'- guCCCUCaGAa-------------CCAUCUUcgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 53860 0.66 0.981713
Target:  5'- aGGGGAGcC-UGGacAGggGCuuuggGCGGGGa -3'
miRNA:   3'- gUCCCUCaGaACCa-UCuuCG-----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 5113 0.66 0.981713
Target:  5'- -cGGuGGcCUUGG-GGGAGCugGGGGu -3'
miRNA:   3'- guCCcUCaGAACCaUCUUCGugUCCC- -5'
33611 3' -53 NC_007605.1 + 51033 0.66 0.983691
Target:  5'- gAGGGGGgCUguugUGGUgcugguuggggaAGGAGCucCAGGGa -3'
miRNA:   3'- gUCCCUCaGA----ACCA------------UCUUCGu-GUCCC- -5'
33611 3' -53 NC_007605.1 + 57568 0.67 0.961846
Target:  5'- gAGGagaaaGAGUCguggUGGUGGggGCugcugcugcaguCGGGGa -3'
miRNA:   3'- gUCC-----CUCAGa---ACCAUCuuCGu-----------GUCCC- -5'
33611 3' -53 NC_007605.1 + 167125 0.68 0.951106
Target:  5'- --uGGAGUUacugGGUGGGAG-ACAGGGa -3'
miRNA:   3'- gucCCUCAGaa--CCAUCUUCgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 37212 0.69 0.903813
Target:  5'- gGGGGAGg---GGcAGggGCagggGCAGGGg -3'
miRNA:   3'- gUCCCUCagaaCCaUCuuCG----UGUCCC- -5'
33611 3' -53 NC_007605.1 + 154397 0.68 0.946825
Target:  5'- cCGGGGAGUU---GUAGAAuccGgACAGGGg -3'
miRNA:   3'- -GUCCCUCAGaacCAUCUU---CgUGUCCC- -5'
33611 3' -53 NC_007605.1 + 12521 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 15590 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 18659 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 21728 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 24797 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 27866 0.68 0.951106
Target:  5'- uGGGGuaAGUCUg---GGAGGCAgAGGGu -3'
miRNA:   3'- gUCCC--UCAGAaccaUCUUCGUgUCCC- -5'
33611 3' -53 NC_007605.1 + 132048 0.68 0.951106
Target:  5'- aCGGGGcuUCggGGUAGggGCAgUAGGc -3'
miRNA:   3'- -GUCCCucAGaaCCAUCuuCGU-GUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.