miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33611 5' -61.8 NC_007605.1 + 18305 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 24443 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 108959 0.66 0.722616
Target:  5'- gGGUCCgUcauuacguagaGCAUAgacUCCACC-CCCCUGUu -3'
miRNA:   3'- -CCGGGgG-----------CGUGU---AGGUGGuGGGGACG- -5'
33611 5' -61.8 NC_007605.1 + 21524 0.66 0.722616
Target:  5'- cGGCgCUCGUcguucaggaACAgCCuCCGCCgCCUGCg -3'
miRNA:   3'- -CCGgGGGCG---------UGUaGGuGGUGG-GGACG- -5'
33611 5' -61.8 NC_007605.1 + 157146 0.66 0.722616
Target:  5'- -uCCCCCagGCGCuuggCCGCCACCgCCUu- -3'
miRNA:   3'- ccGGGGG--CGUGua--GGUGGUGG-GGAcg -5'
33611 5' -61.8 NC_007605.1 + 39980 0.66 0.722616
Target:  5'- gGGUCCCgGgACG-CC-CCcUCCCUGCu -3'
miRNA:   3'- -CCGGGGgCgUGUaGGuGGuGGGGACG- -5'
33611 5' -61.8 NC_007605.1 + 21374 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 33650 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 27512 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 69106 0.66 0.722616
Target:  5'- uGGCCCCgGCuggcCAUCgagauuguuuaCAUCugCCCgGCu -3'
miRNA:   3'- -CCGGGGgCGu---GUAG-----------GUGGugGGGaCG- -5'
33611 5' -61.8 NC_007605.1 + 56153 0.66 0.722616
Target:  5'- uGUCCCUG-AUGUCCGCCGUacaCCUGCg -3'
miRNA:   3'- cCGGGGGCgUGUAGGUGGUGg--GGACG- -5'
33611 5' -61.8 NC_007605.1 + 36439 0.66 0.722616
Target:  5'- gGGCuuCCCgGCAgAggcCCugCGCCCCgGUa -3'
miRNA:   3'- -CCG--GGGgCGUgUa--GGugGUGGGGaCG- -5'
33611 5' -61.8 NC_007605.1 + 121170 0.66 0.722616
Target:  5'- aGGCCCCa--AgAUgCAgCugCCCUGCc -3'
miRNA:   3'- -CCGGGGgcgUgUAgGUgGugGGGACG- -5'
33611 5' -61.8 NC_007605.1 + 30581 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 15236 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 12167 0.66 0.722616
Target:  5'- uGCCCCUcUugG-CCACgCACCCCggGCc -3'
miRNA:   3'- cCGGGGGcGugUaGGUG-GUGGGGa-CG- -5'
33611 5' -61.8 NC_007605.1 + 93133 0.66 0.722616
Target:  5'- aGGCaCCCGagaGCA-CCACCACCUCc-- -3'
miRNA:   3'- -CCGgGGGCg--UGUaGGUGGUGGGGacg -5'
33611 5' -61.8 NC_007605.1 + 105374 0.66 0.722616
Target:  5'- uGGCCUUa-CAC-UCCAUCACCCCcagaucgGCg -3'
miRNA:   3'- -CCGGGGgcGUGuAGGUGGUGGGGa------CG- -5'
33611 5' -61.8 NC_007605.1 + 126198 0.66 0.721675
Target:  5'- cGGCaggggCCUGUACA-CCGCCcugugcuGCCaCCUGCc -3'
miRNA:   3'- -CCGg----GGGCGUGUaGGUGG-------UGG-GGACG- -5'
33611 5' -61.8 NC_007605.1 + 75323 0.66 0.71317
Target:  5'- uGCUCCUGCcCcUCCugCcCCuCCUGCu -3'
miRNA:   3'- cCGGGGGCGuGuAGGugGuGG-GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.