miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33612 3' -53 NC_007605.1 + 44455 0.66 0.985875
Target:  5'- gUCGGcGGAUGUgCCUCaggaGGGUCAG-GAa -3'
miRNA:   3'- -GGCCuUCUACG-GGAGg---UCCAGUUuCU- -5'
33612 3' -53 NC_007605.1 + 156660 0.66 0.985875
Target:  5'- aCGGAGGggGCCUgaagcCCGGGgacuGGGAa -3'
miRNA:   3'- gGCCUUCuaCGGGa----GGUCCagu-UUCU- -5'
33612 3' -53 NC_007605.1 + 51785 0.66 0.985875
Target:  5'- cUCGGAGua-GCCgUCCAGGUCcugcAGAa -3'
miRNA:   3'- -GGCCUUcuaCGGgAGGUCCAGuu--UCU- -5'
33612 3' -53 NC_007605.1 + 23709 0.66 0.984109
Target:  5'- gCCaGGAAGGUaagGCCCa-CGGGUCAcGGGg -3'
miRNA:   3'- -GG-CCUUCUA---CGGGagGUCCAGUuUCU- -5'
33612 3' -53 NC_007605.1 + 125917 0.66 0.982181
Target:  5'- gCCGGGggguuGGAuucccucuucaUGCCCUCCAGGa------ -3'
miRNA:   3'- -GGCCU-----UCU-----------ACGGGAGGUCCaguuucu -5'
33612 3' -53 NC_007605.1 + 126099 0.66 0.980081
Target:  5'- cCCGGAGacuGGUgGCCCUCCug--CGAAGGg -3'
miRNA:   3'- -GGCCUU---CUA-CGGGAGGuccaGUUUCU- -5'
33612 3' -53 NC_007605.1 + 41627 0.66 0.977803
Target:  5'- aCCGGGgugugcAGAUGCagguCUCCGGGUgGGcAGGc -3'
miRNA:   3'- -GGCCU------UCUACGg---GAGGUCCAgUU-UCU- -5'
33612 3' -53 NC_007605.1 + 4407 0.66 0.977803
Target:  5'- cCUGGugGAGAUgGCCCUggCCGGGcagCGGGGAg -3'
miRNA:   3'- -GGCC--UUCUA-CGGGA--GGUCCa--GUUUCU- -5'
33612 3' -53 NC_007605.1 + 117531 0.66 0.977803
Target:  5'- gCGGGAcGAUcUCCUCCAGGcCAcGGGg -3'
miRNA:   3'- gGCCUU-CUAcGGGAGGUCCaGUuUCU- -5'
33612 3' -53 NC_007605.1 + 71097 0.66 0.977803
Target:  5'- aCGGGucuuGGAUGggCUCUAgGGUCAGAGAg -3'
miRNA:   3'- gGCCU----UCUACggGAGGU-CCAGUUUCU- -5'
33612 3' -53 NC_007605.1 + 70821 0.66 0.977803
Target:  5'- gCCaGGAGGAUGUCUUCCGcGGgagcUAGGGGc -3'
miRNA:   3'- -GG-CCUUCUACGGGAGGU-CCa---GUUUCU- -5'
33612 3' -53 NC_007605.1 + 104674 0.66 0.977803
Target:  5'- cCCGGggGccagUCUCCGGGUCAGGu- -3'
miRNA:   3'- -GGCCuuCuacgGGAGGUCCAGUUUcu -5'
33612 3' -53 NC_007605.1 + 63299 0.66 0.975338
Target:  5'- gCCGGGGuGUaGCCgC-CCGGGUCGAGGc -3'
miRNA:   3'- -GGCCUUcUA-CGG-GaGGUCCAGUUUCu -5'
33612 3' -53 NC_007605.1 + 159515 0.66 0.975338
Target:  5'- gCCGGccGggGCaCCUCCGGGcUCucccGGGAc -3'
miRNA:   3'- -GGCCuuCuaCG-GGAGGUCC-AGu---UUCU- -5'
33612 3' -53 NC_007605.1 + 66039 0.67 0.972954
Target:  5'- cCUGGcAGAcGCCCUCCugggccucgacgcgcGGUCAGGGc -3'
miRNA:   3'- -GGCCuUCUaCGGGAGGu--------------CCAGUUUCu -5'
33612 3' -53 NC_007605.1 + 40323 0.67 0.96982
Target:  5'- gUGGggGGUGCgCUCcCAGGcCGGAc- -3'
miRNA:   3'- gGCCuuCUACGgGAG-GUCCaGUUUcu -5'
33612 3' -53 NC_007605.1 + 96736 0.67 0.96982
Target:  5'- uCCGGGucuccaccgcgcAGGccCCCUCCAGGUaGAAGGc -3'
miRNA:   3'- -GGCCU------------UCUacGGGAGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 39307 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 39057 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 39432 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.