miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33612 3' -53 NC_007605.1 + 156721 1.11 0.004934
Target:  5'- cCCGGAAGAUGCCCUCCAGGUCAAAGAc -3'
miRNA:   3'- -GGCCUUCUACGGGAGGUCCAGUUUCU- -5'
33612 3' -53 NC_007605.1 + 47764 0.75 0.628803
Target:  5'- cCCGGggGccuUGUCCgcugggCCAGGUCAcAGAc -3'
miRNA:   3'- -GGCCuuCu--ACGGGa-----GGUCCAGUuUCU- -5'
33612 3' -53 NC_007605.1 + 38341 0.75 0.64943
Target:  5'- -aGGggGAccugaccugcaUGCUCUCCAGGccaUCAGAGAa -3'
miRNA:   3'- ggCCuuCU-----------ACGGGAGGUCC---AGUUUCU- -5'
33612 3' -53 NC_007605.1 + 57978 0.75 0.659726
Target:  5'- aCCGGAGGAUGCCC-CCuuuguGGUgGgacuGAGAu -3'
miRNA:   3'- -GGCCUUCUACGGGaGGu----CCAgU----UUCU- -5'
33612 3' -53 NC_007605.1 + 104188 0.72 0.796456
Target:  5'- cUCGGGgaagaugGGGUGCCUggCCAGGUCAcccAAGGa -3'
miRNA:   3'- -GGCCU-------UCUACGGGa-GGUCCAGU---UUCU- -5'
33612 3' -53 NC_007605.1 + 141707 0.72 0.797364
Target:  5'- gCGGggGGUGCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACGGga------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 116633 0.71 0.856667
Target:  5'- uCCaGGAGGGUGCaaauauUCUCCAGGcgcugcaccUCAGAGAc -3'
miRNA:   3'- -GG-CCUUCUACG------GGAGGUCC---------AGUUUCU- -5'
33612 3' -53 NC_007605.1 + 141910 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 142012 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 142114 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 142216 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 142318 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 141808 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 141605 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 141503 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 141401 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 141299 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 141197 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 140891 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5'
33612 3' -53 NC_007605.1 + 142420 0.71 0.864371
Target:  5'- gCGGggGGUGgCCggcugcagCCGGGUCcGGGGu -3'
miRNA:   3'- gGCCuuCUACgGGa-------GGUCCAGuUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.