miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33612 3' -53 NC_007605.1 + 39182 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 38932 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 39057 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 38308 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 38683 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 39557 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 38433 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 38558 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 38808 0.67 0.969522
Target:  5'- gCCGGuGGGuccgcugggccgcUGCCCcgcUCCGGGUgGGGGGu -3'
miRNA:   3'- -GGCCuUCU-------------ACGGG---AGGUCCAgUUUCU- -5'
33612 3' -53 NC_007605.1 + 34501 0.67 0.966752
Target:  5'- -gGGuuGGUGUCCUCCcgGGGUcCAGAGu -3'
miRNA:   3'- ggCCuuCUACGGGAGG--UCCA-GUUUCu -5'
33612 3' -53 NC_007605.1 + 60528 0.67 0.963471
Target:  5'- gCGcGAGAUGUCCUCCgagaGGGUCucacccGAGAc -3'
miRNA:   3'- gGCcUUCUACGGGAGG----UCCAGu-----UUCU- -5'
33612 3' -53 NC_007605.1 + 162259 0.67 0.963471
Target:  5'- -aGGGAGAUGUCCUgCAggauGGUCAGc-- -3'
miRNA:   3'- ggCCUUCUACGGGAgGU----CCAGUUucu -5'
33612 3' -53 NC_007605.1 + 58354 0.67 0.963471
Target:  5'- aCUGGAcacaAGcucggGCCCcaCCAGGUCAAAGc -3'
miRNA:   3'- -GGCCU----UCua---CGGGa-GGUCCAGUUUCu -5'
33612 3' -53 NC_007605.1 + 2947 0.67 0.963471
Target:  5'- aCUGGAGGA-GCCCUCCuuGUCc---- -3'
miRNA:   3'- -GGCCUUCUaCGGGAGGucCAGuuucu -5'
33612 3' -53 NC_007605.1 + 101683 0.67 0.96313
Target:  5'- -aGGAAGGgggGCUccgagagCUCCGGGUCAAAc- -3'
miRNA:   3'- ggCCUUCUa--CGG-------GAGGUCCAGUUUcu -5'
33612 3' -53 NC_007605.1 + 138647 0.68 0.956244
Target:  5'- aCCGGggG--GCCCgggCCGGGUUGGuccAGGg -3'
miRNA:   3'- -GGCCuuCuaCGGGa--GGUCCAGUU---UCU- -5'
33612 3' -53 NC_007605.1 + 153591 0.68 0.956244
Target:  5'- aCGGAGGggGCCUgaagcCCGGGgacUAGGGAa -3'
miRNA:   3'- gGCCUUCuaCGGGa----GGUCCa--GUUUCU- -5'
33612 3' -53 NC_007605.1 + 157060 0.68 0.956244
Target:  5'- aCCGGggG--GCCCgggCCGGGUUGGuccAGGg -3'
miRNA:   3'- -GGCCuuCuaCGGGa--GGUCCAGUU---UCU- -5'
33612 3' -53 NC_007605.1 + 147453 0.68 0.956244
Target:  5'- aCGGAGGggGCCUgaagcCCGGGgacUAGGGAa -3'
miRNA:   3'- gGCCUUCuaCGGGa----GGUCCa--GUUUCU- -5'
33612 3' -53 NC_007605.1 + 147853 0.68 0.956244
Target:  5'- aCCGGggG--GCCCgggCCGGGUUGGuccAGGg -3'
miRNA:   3'- -GGCCuuCuaCGGGa--GGUCCAGUU---UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.