miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33613 3' -55.2 NC_007605.1 + 48425 0.66 0.943437
Target:  5'- -gGGgagaaaGACGGGCGgGgGCguagGGGAGGa -3'
miRNA:   3'- gaCCaa----UUGCCCGUgCgUGa---CCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 118230 0.66 0.943437
Target:  5'- uUGGUaauACGGGUAguaGCACUGgugguGGAGGa -3'
miRNA:   3'- gACCAau-UGCCCGUg--CGUGAC-----CCUCU- -5'
33613 3' -55.2 NC_007605.1 + 43365 0.66 0.938802
Target:  5'- -gGGUUAuugacauCGGGgACGaCAuCUGGGAGu -3'
miRNA:   3'- gaCCAAUu------GCCCgUGC-GU-GACCCUCu -5'
33613 3' -55.2 NC_007605.1 + 65307 0.66 0.938802
Target:  5'- uCUGGcgguGCGGGCACaGCgggccgacacGCaGGGGGAu -3'
miRNA:   3'- -GACCaau-UGCCCGUG-CG----------UGaCCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 11009 0.66 0.938802
Target:  5'- cCUuGUUGGCGGGagaaggaauaACGCcuuauCUGGGAGGa -3'
miRNA:   3'- -GAcCAAUUGCCCg---------UGCGu----GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 48694 0.66 0.92882
Target:  5'- cCUGGc---CGGGUcagAUGUugUGGGGGAu -3'
miRNA:   3'- -GACCaauuGCCCG---UGCGugACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 57072 0.66 0.92724
Target:  5'- cCUGGccaccacaucgGACGGGCAgGCAuuuuuggugcugcCUGGGGGc -3'
miRNA:   3'- -GACCaa---------UUGCCCGUgCGU-------------GACCCUCu -5'
33613 3' -55.2 NC_007605.1 + 89398 0.67 0.923471
Target:  5'- aUGGUUAAUGGGUugaGUuaagGGGAGGu -3'
miRNA:   3'- gACCAAUUGCCCGug-CGuga-CCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 44004 0.67 0.922923
Target:  5'- gCUGGgu--UGGGaaaguccagccuuUACuGCACUGGGAGAg -3'
miRNA:   3'- -GACCaauuGCCC-------------GUG-CGUGACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 72493 0.67 0.917883
Target:  5'- -aGGUgccCGGGUGCGUGgUcGGGAGAa -3'
miRNA:   3'- gaCCAauuGCCCGUGCGUgA-CCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 76617 0.67 0.917883
Target:  5'- -aGGgaaacgAugGGGCAa--ACUGGGGGAa -3'
miRNA:   3'- gaCCaa----UugCCCGUgcgUGACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 34246 0.67 0.912058
Target:  5'- uCUGGggu---GGCugGCggGCUGGGGGAg -3'
miRNA:   3'- -GACCaauugcCCGugCG--UGACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 78415 0.67 0.911462
Target:  5'- -aGGUUGGuaGGCACGUgaguagaGCUGGGuAGAc -3'
miRNA:   3'- gaCCAAUUgcCCGUGCG-------UGACCC-UCU- -5'
33613 3' -55.2 NC_007605.1 + 133699 0.67 0.899699
Target:  5'- gUGGUUu-UGGGUugGgACUGGGGu- -3'
miRNA:   3'- gACCAAuuGCCCGugCgUGACCCUcu -5'
33613 3' -55.2 NC_007605.1 + 30845 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 27776 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 24707 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 21638 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 18569 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5'
33613 3' -55.2 NC_007605.1 + 12431 0.68 0.886415
Target:  5'- -cGGUcGGCuGGGCugGCcgagcccggguCUGGGAGGu -3'
miRNA:   3'- gaCCAaUUG-CCCGugCGu----------GACCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.